Pseudomonas aeruginosa PAO1, PA0958 (oprD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAAACGCATTCGCCACAGACAACTCGATGGCAACCAACCCTTGAAGCAGACGGATTACAATCAGGTTTCAAAGCATAATTCGTTTGCTTTCAAACAGAAT AGCCTCGCTCTCGAAGAGACCAACTGGAATACATAGGCGAAGCCATTTTCCAATTTGTGCACGGAGTTTGCTTATACCTCTTTCATCACAGTAAGAGGGG CCGTACGGAACATGACATTTTTATTACAAGGCCCCGCCAATCGGGAAAAGCGACTTGAGAAGCGACCTCAACAAGAGTGACCAACCCCGCGACATACGTC ATTTTTTCAACTGCGCACCTACGCAGATGCGACATGCGTCATGCAATTTTGCGACAGCACGGTAAAGAATCCGTCGCTTCGGAACCTCAACTATCGCCAA GAAACACTGCGTGCTATAAGTTAGCGCCGACAAGAAGAACTAGCCGTCACTGCGGCACTGTGATGGCAGAGATAATTTCAAAACCAAAGGAGCAATCACA
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| DNA Sequence for Gene |
>PA0958
|oprD
ATGAAAGTGATGAAGTGGAGCGCCATTGCACTGGCGGTTTCCGCAGGTAGCACTCAGTTCGCCGTGGCCGACGCATTCGTCAGCGATCAGGCCGAAGCGA AGGGGTTCATCGAAGACAGCAGCCTCGACCTGCTGCTCCGCAACTACTATTTCAACCGTGACGGCAAGAGCGGCAGCGGGGACCGCGTCGACTGGACCCA AGGCTTCCTCACCACCTATGAATCCGGCTTCACCCAAGGCACTGTGGGCTTCGGCGTCGATGCCTTCGGCTACCTGGGCCTGAAGCTCGACGGCACCTCC GACAAGACCGGCACCGGCAACCTGCCGGTGATGAACGACGGCAAGCCGCGCGATGACTACAGCCGCGCCGGCGGCGCCGTGAAGGTGCGCATCTCCAAGA CCATGCTGAAGTGGGGCGAGATGCAACCGACCGCCCCGGTCTTCGCCGCTGGCGGCAGCCGCCTGTTCCCGCAGACCGCGACCGGCTTCCAGCTGCAGAG CAGCGAATTCGAAGGGCTCGACCTCGAGGCAGGCCACTTCACCGAGGGCAAGGAGCCGACCACCGTCAAATCGCGTGGCGAACTCTATGCCACCTACGCA GGCGAGACCGCCAAGAGCGCCGATTTCATTGGGGGCCGCTACGCAATCACCGATAACCTCAGCGCCTCCCTGTACGGCGCCGAACTCGAAGACATCTATC GCCAGTATTACCTGAACAGCAACTACACCATCCCACTGGCATCCGACCAATCGCTGGGCTTCGATTTCAACATCTACCGCACAAACGATGAAGGCAAGGC CAAGGCCGGCGACATCAGCAACACCACTTGGTCCCTGGCGGCAGCCTACACTCTGGATGCGCACACTTTCACCTTGGCCTACCAGAAGGTCCATGGCGAT CAGCCGTTTGATTATATCGGCTTCGGCCGCAACGGCTCTGGCGCAGGTGGCGACTCGATTTTCCTCGCCAACTCTGTCCAGTACTCCGACTTCAACGGCC CTGGCGAGAAATCCTGGCAGGCTCGCTACGACCTGAACCTAGCCTCCTATGGCGTTCCCGGCCTGACTTTCATGGTCCGCTATATCAATGGCAAGGACAT CGATGGCACCAAGATGTCTGACAACAACGTCGGCTATAAGAACTACGGCTACGGCGAGGATGGCAAGCACCACGAAACCAACCTCGAAGCCAAGTACGTG GTCCAGTCCGGTCCGGCCAAGGACCTGTCGTTCCGCATCCGCCAGGCCTGGCACCGTGCCAACGCCGACCAGGGCGAAGGCGACCAGAACGAGTTCCGCC TGATCGTCGACTATCCGCTGTCGATCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGACCGACAGGCAACGAAAAAACCCGGCATCGCCGGGTTTTTTCTTCTTGGCGGCAACGCGCCTATAAAGGAAGGGCGTAGGTACCGGTGACATGGGCC ACCAGGTCTTCCTCATTACTCTGCGAAAACACCCCGACCTCGCAGACGACCTGGCGCCGCCCCAGCTTGAGGATGCTCGCCTCGGCCAACAGGTCCTCGG GCCTGGGCTTGCTGAGGAAGTTGATGTTCAGGTTCGAGGTCACGGCCATCTCGACCGCCCCGAGACGCCCGAGAATGACCGCGTACATCGCCGCGTCGGC CAGCGCCATGATGGTCGGGCCGGACAGCGTTCCACCGGGACGCACCAGCTTGCCGTGAAAAGGTATGCGCGCCAGCGCATGTCGTTCGTCGAGACGCTCG ACACGAAAATCGATGTCCTCGGCCATGGGTAGCCCCATGCGGATCAACGCCTGTACCTGCGCCGCGTTCATTGCCTGCTGACTCCTCATCATCGATGGCC
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| Amino Acid Sequence |
>Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor
MKVMKWSAIALAVSAGSTQFAVADAFVSDQAEAKGFIEDSSLDLLLRNYYFNRDGKSGSGDRVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGTS DKTGTGNLPVMNDGKPRDDYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTEGKEPTTVKSRGELYATYA GETAKSADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGD QPFDYIGFGRNGSGAGGDSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYV VQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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