Strain | Pseudomonas aeruginosa CF614 genomic scaffold adggb-supercont1.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCATCGAGGTGCAGTCCGGCAGCTACCTCGGCGAGGACGACATCGAGCGCCTGGAAGACGTCTACGGGCGCACCGCAGAACCGGCCCTGCAAGTGGTCGC CGGCAGCCGCTGAAGCGTCGACCCGGCCCCCTGGCGGAGCGATCCGCCAGGGGGTTGTTTTTTTCCGACAACCTACGGGATTGACTTTCCCTGGCCCTCC CCATGTTTCCATGAAGTTTCCGGAATATTCACGGGGAGCGGACATCAAGTATTAATGAACCCTTAAAGAAACAGGACTCGGGTTATTAATAAAAGCCACT CAGAAAACACCCGAGATCCATTCCAACCAACCCTGCAAGCCCCTGAAAACGAGGCTTCCGGCTTTATCCTCCAGTTTCTTCGAGTTCGTTCAGTCTTCAT TCAGCCGTTGTTAAGCGAGTCTTAACAAACGTTCAGGCAGCATTCAGCGACATATAAATAACCTCTTCGTACCGCCCTCCCAGTACCGAGGCTTCATTAC
|
|
DNA Sequence for Gene |
>Q093_01383
ATGTCACTGGACTTTCTGCCATTCTCCCGGCCAAGCATCGGCGAGGACGAAATCGCCGCCGTGGAGCAGGTCCTGCGTTCCGGCTGGATCACCACCGGGC CGAAGAACCAGGAGCTCGAACAGCGCTTCGCCGAACGCCTCGGCTGCCGCCACGCGGTGGCGCTATCCTCGGCCACCGGCGCCCTGCACGTCACCCTGCT GGCGCTGGGCATCGGCCCCGGCGACGAAGTGATCACGCCGTCGCTGACCTGGGTCTCCACCGCCAACGTCATCACCCTGCTCGGCGCCACCCCGGTGTTC GTCGACGTCGACCGCGACACCCTGATGTGTTCGGCGCAGGCAGTGGAAGCCGCCATCGGCCCGCGCACCCGCGCCATCGTGCCGGTGCACTACGCCGGCT CCACCCTGGATCTCGAAGGCCTGCGCACGGTCGCCGGGCGCCACGGCATCGCCCTGGTCGAGGACGCCGCCCACGCGGTCGGCAGCGAATACCGCGGGCG CCCGGTAGGCTCCCGCGGCACGGCGATCTTTTCCTTCCACGCGATCAAGAACCTGACCTGCGCCGAAGGCGCGATGTTCGTCAGCGACGACAGTGCCCTC GCCGAACGGGTCCGCCGCCTCAAGTTCCACGGCCTCGGGGTCGATGCCTACGACCGCCTGAGCCATGGACGCAAGCCGCAGGCGGAAGTGATCGAGCCCG GTTTCAAATACAACCTGGCCGACCTCAACGCCGCCCTCGCGCTGGTCCAGCTCAAGCGCCTGGACGCGCTCAACGCGCGCCGCCAGGCCCTCGCCGAACG CTACCTGGAGCGCCTCGCCGGCCTGCCGCTGGCGCCGCTCGGCCTGCCCGCGCACAAGCAGCGCCACGCCTGGCACCTGTTCATCCTGCGCATCGACGCC GAGGCCTGCGGCCTGGGCCGCGACGCCTTCATGGAAGCCCTGAAGGCGCGCGGCATCGGTAGCGGCATCCATTTCATCGCCAGTCACCTGCACCACTACT ACCGCCAGCGCCAGCCGCGCCTGAGCCTGCCCAACAGCGAGTGGAACTCGGCCCGCCTGTGCTCCATCCCGCTGTTCCCCGACATGCGCGACGACGACAT CGAGCGCGTCGCCCGCGCCATCGAGGAGATCCTGGAGAAACGTCGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
AGCCCTATCCGATCGACCTGGTCTCGGTGGTGATCCCGGTCTACAACGAGGAAGCCAGCCTGCCCGAACTGCTGCGCCGCACCGAGGCCGCCTGCCTGGA GCTGGGCCGCGCCTTCGAGATCGTGCTGGTCGACGACGGCAGCCGCGACCGCTCCGCGGAACTCTTGCAGGCCGCCGCCGAACGCGACGGCAGCGCCGTG GTGGCGGTGATCCTCAACCGCAACTACGGCCAGCACGCGGCGATCCTCGCCGGCTTCGAACAGTCCCGTGGCGACCTGGTGATCACCCTCGATGCCGACC TGCAGAACCCGCCGGAGGAAATCCCGCGCCTGGTGGAGCGCGCCGCGCAGGGCTATGACGTGGTCGGCAGCATCCGCGCCGAGCGCCAGGACTCGGCCTG GCGGCGCTGGCCTTCGCGCCTGGTGAACCTGGCGGTGCAGCGCTCCACCGGGGTCGCCATGCACGACTACGGCTGCATGCTGCGCGCCTACCGGCGCAGC
|
|
Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase
MSLDFLPFSRPSIGEDEIAAVEQVLRSGWITTGPKNQELEQRFAERLGCRHAVALSSATGALHVTLLALGIGPGDEVITPSLTWVSTANVITLLGATPVF VDVDRDTLMCSAQAVEAAIGPRTRAIVPVHYAGSTLDLEGLRTVAGRHGIALVEDAAHAVGSEYRGRPVGSRGTAIFSFHAIKNLTCAEGAMFVSDDSAL AERVRRLKFHGLGVDAYDRLSHGRKPQAEVIEPGFKYNLADLNAALALVQLKRLDALNARRQALAERYLERLAGLPLAPLGLPAHKQRHAWHLFILRIDA EACGLGRDAFMEALKARGIGSGIHFIASHLHHYYRQRQPRLSLPNSEWNSARLCSIPLFPDMRDDDIERVARAIEEILEKRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|