Pseudomonas aeruginosa MSH-10, L346_02332
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa MSH-10 genomic scaffold acUKG-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGCGGGCTGACCGTGCTCGGCACCAGCGGCTACTTGGCGATGGTGATCCTCGGCTCCTACGTCGGCTACGTGGTCAGTGCCTTCCTCACCGACCTGAT CGGGCGCAAGAAGAACTTCGTCCTGTTCGCCGTCGGCTCCTTCACCGTGGTCCTGCTCTACACCCAGTTGCCGGTGAGCAACGGCGCCATGCTCTGGCTC GGCTTCCCGCTCGGCTTCTTCGCCTCGGGCATCTTCAGCGGCATGGGCTCGTTCCTCACCGAACTGTTCCCAACCCGCATCCGCGGCTCCGGCCAGGGCT TCTGCTACAACGCCGGGCGCGCCATCGCCGCGCTGTTCCCGATGCTGATCGGCATGCTCGGCCAGAAGCTCTCGCTGGGCCTGGGGATCGGCGCCTTCGC CGCGGTCTCCTACGGCGTGGTGATCCTCGCCGCCCTCAGCCTGCCGGAAACCCGCGGCAAGCAACTGGAACTCTGAGCCGTCGACCGAGGAAATCCCAGC
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| DNA Sequence for Gene |
>L346_02332
ATGCATCCCACTCCCCGCCTGGCTGCCGCGCTGCTCGCCGGCAGCGGGCTGGGCTGGCCGCTGCTCGCCCAGGCCGACCTGGTCGAGGACAGCCACGCCA GCCTCGAACTGCGCAACTTCTACTTCAATCGCGACTTCCGCCAGAGCGGCGCGCGCGACAACGCCGACGAATGGGCGCAGGGCTTCCTCCTGCGCCTGGA GTCCGGCTTCAGCGAAGGCACCGTCGGCTTCGGCGTCGACGCCATCGGCCTGCTCGGCTTCAAGCTCGACTCCGGCGGCGGCAGCGGAGGAACCGGGCTG CTGCCGGCCGACGGCTCCGCCGGCGGCTCCCAGGATGACTACGCCAAGCTCGGCCTGACCGCCAAGGCGCGGGTCTCCAACAGCCTGCTCAAGGTCGGCG CGCTGCACTTCAAGAGCCCGCTGGTCTCGGCCAACGACACCCGCCTGCTGCCGGAACTGTTCCGCGGCGCGCTGCTCGACGTGCAGGAGATCGACGGCCT GACCCTGCGCGGCGCGCACCTGGACCGCAACAAGCTGAACAGCTCCAGCGACTACCAGGTGTTCAGCGCCAACCGCATCGGCGGGCGCAGCGATGCCTTC GACTTCGCCGGCGGCGACTATCGCCTGACCCCGGCGCTGACCGCCAGCCTGCACCAGGGTCGGCTCAGGGACATCTACCGGCAGACCTTCGCCGGCCTGG TACACACCCTCGACCTCGGCGGACAGCGTTCGCTCAAGAGCGACCTGCGCTTCGCCCGGGCCAGCGAGGACGGCGGCTTCCGCGAACTGGACAACCGCGC CTTCGGCGCCCTCTTCAGCCTGCGCCTGGGCGCCCACGCGGTGGCCGCCGGCTACCAGCGGATCAGTGGCGACGATCCCTATCCCTACATCGCCGGCAGC GACCCGTACCTGGTCAACTTCATCCAGATCGGCGACTTCGGCAACGTCGACGAGCGTTCCTGGCAACTGCGCTACGACTACGATTTCGGCGCGCTCGGCC TGCCCGGCCTGAGCTTCATGAGCCGCTACGTCTCCGGCGACAACGTCGCCCGCGGCGCGGCCAACGACGGCAAGGAATGGGAACGCAACACCGACCTCGG CTACGTGGTGCAGAGCGGGCCGCTGAAGAACCTCGGGGTGAAATGGCGCAACGCCACGGTGCGTTCGAATTTCGCCAACGACCTCGACGAAAATCGCCTG ATCCTCAGCTACAGCCTGACGCTGTGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCCGGCGAGCAATGACCTGAAGGAACCTGCATGAACAACCTGTTGTTGAACTGCGATATCGGCGAGAGCTTCGGTGCCTGGCGCATGGGCCTGGACGC CGAGGTGATGCCGCTGATCGATTGCGCCAACATCGCCTGCGGCTTCCACGCCGGCGATCCCGGCACCATGCGCCGCACCGTGGCCCTGGCGGTGGAGCAT GGCGTGCGCATCGGCGCGCACCCCGGCTACCCCGACCTGGTCGGCTTCGGCCGGCGCTCGCTGGCCTGCTCGGCGCAGGAAGTGGAAGACCTGCTGCTCT ACCAGATCGGCGCCCTCGACGGACTCTGCCGCGCCCAGGGCACGCGGGTACGCTACGTCAAGCCGCATGGCGCCCTGTACCAGGACATGATGCGCGACCC GGCGATCCTCGCCGCCGTGCTGCGCGCACTGGCGGCCTACGACCGCACCCTGCCGCTGATGCTGATGAGCACCCGCGACAACACCGCGGCGCGCGCGCTG
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| Amino Acid Sequence |
>porin
MHPTPRLAAALLAGSGLGWPLLAQADLVEDSHASLELRNFYFNRDFRQSGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSGGGSGGTGL LPADGSAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAF DFAGGDYRLTPALTASLHQGRLRDIYRQTFAGLVHTLDLGGQRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGS DPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRL ILSYSLTLW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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