Pseudomonas sp. MOIL14HWK12:I1, PSEK12I1_RS0113810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00672 HAMP domain IPR003660 HAMP domain 208 260 7.8E-14
CDD cd06225 HAMP - - 276 317 7.20915E-4
SUPERFAMILY SSF158472 HAMP domain-like - - 213 260 7.19E-7
SMART SM00304 HAMP_11 IPR003660 HAMP domain 270 322 2.7E-6
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 290 599 3.53E-58
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 415 564 5.7E-29
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 16 260 7.4E-77
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 464 493 1.6E-15
Gene3D G3DSA:1.10.287.950 - - - 271 600 1.6E-63
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 330 598 8.4E-39
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 435 462 1.6E-15
Gene3D G3DSA:6.10.340.10 - - - 173 268 6.4E-16
SMART SM00304 HAMP_11 IPR003660 HAMP domain 211 263 1.2E-11
Pfam PF00672 HAMP domain IPR003660 HAMP domain 268 318 0.018
CDD cd06225 HAMP - - 214 258 6.15076E-11
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 358 387 1.6E-15
Pfam PF05227 CHASE3 domain IPR007891 CHASE3 39 177 7.7E-13
Coils Coil Coil - - 103 123 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.