Pseudomonas sp. MOIL14HWK12:I1, PSEK12I1_RS0113625 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I1 PseK12I1DRAFT_scaffold_0.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCACGCATGACGAAGGTGATGTACTTGAGTGTGACGACCCAGATGAGCGACCAGAAGATCAGCGACAGGATGCCGAGCACACTGTCGTGATTCAGCG GCAAGCCGTAGTGCGGCGAAAAGACTTCCTTGAGGGTATAGAGAGGACTGGTGCCGATGTCGCCGTATACCACACCGGTGGCGAGCACGATCATTCCCAA GGCCGAAGGGGCTTTACCACCGTGCTCGTGTTCCGGACGGCTCATGCAGGGCTCCTAGAGTCTAAAATCGGCGCATCCTGCGCCGAAGCGGCGTCAGGAT CAAGTTGAAAAGGCCGGTAGCGTGGCGCGCGCAACCTCTCAGCGCAGCGCTTCCAGCACCATAGACTCCTTGGTCGGCAAAAAGCTCTGCGCGGTCGCCA GGACCTGCCTGCCCCTTCCAAGCAGCGGCAGAGATGGCTAGAATCGCGCGTTTTTTGATCAAGGCGCCTCCTGAGCGCCCGCCGAGGTTAGCCCATGTCC
|
|
| DNA Sequence for Gene |
>PSEK12I1_RS0113625
|rimO
ATCCAAACGTCCGCCCCCAAGGTCGGTTTCGTCAGCCTCGGCTGTCCCAAGGCCACCGTCGACTCCGAACGCATCCTCACCCAGCTGCGCATGGAAGGCT ACGAGATCGTGCCGACCTATGAAGACGCCGACGTAGTGGTGGTCAACACCTGCGGCTTTATCGACAGCGCCAAGGCCGAGTCCCTGGACGCCATTGGCGA GGCCATCGCCGAGAACGGCAAGGTGATCGTCACCGGGTGCATGGGTGTGGACGAGGGCAACATCCGTGGCGTGCATCCCAGCGTGCTGGCGGTGACCGGT CCGCAGCAGTACGAGCAGGTGGTCAGCGCCGTGCACGAGGTGGTCCCGCCGCAGCTGGAGCACAATCCGCTGATCGATCTGGTGCCGCCCCAGGGCATCA AGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCCTCCATGCGCGGCAAGCTGGTCAG CCGCCCGGTGGGCGACGTGCTGTCCGAGGCCGAGCGCCTGGTCAAGGCCGGCGTCAAGGAGCTGCTGGTGATCTCCCAGGACACCAGTGCCTACGGCGTC GACCTCAAGTACAAGCTGGACTTCTGGAACGGCCAGCCGGTCAAGACGCGCATGCTGGAGCTGTGCGAGGCGCTGTCGGGCATGGGCGTCTGGGTGCGCC TGCACTATGTCTACCCCTACCCCAATGTCGACGACGTCATTCCGCTGATGGCCGCCGGCAAGCTGCTGCCCTACCTGGACATCCCCTTCCAGCACGCCAG CCCCAAGGTGCTCAAGTCCATGAAGCGCCCGGCGTTCGAGGACAAGACCCTGGCGCGCATCAAGCGCTGGCGCGAGATCTGCCCGGAGCTGACCATCCGC TCTACCTTCATCGTCGGCTTTCCCGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTCACCGAGGCCCAGCTCGATCGCGTCGGCTGCTTCC AGTACTCGCCGGTCGAGGGCGCACCCGCCAACGAGCTGGGCCTGGAGCCGGTTGCGGACGAGGTCAAGCAGGAGCGCTGGGAGCGCTTCATGGCGCACCA GCAGGCCATCTCCGCCGCGCGCCTGCAGCTCAAGATCGGTCGCGAGATCGAGGTGCTGATCGACGAGGTGGACGACCAGGGCGCCATCGGCCGTTCCTAT GCCGATGCCCCGGAAATCGACGGCAACGTCTATGTCGACAGCGCCAGTCCGCTGAAGCCGGGTGACAAGGTCTGGGTGCGGGTCACCGACGCCGACGAGT ACGACCTCTGGGCAGAGGCGCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTCCTAGCTAGTCATGCAGGCGGTGGGTGCCGGGCACATGGGCGTGCCCGGCCGCACTGCAGCTGGCGGTGGTCGCCGATGGCGCCGCCGGCTGACCGAG TTCGCGCAGGATGCCGCAACGGTCCCCTTCGCCCTCTCCCTGGCAGTGGCGCCTCAGGGTCACCAGCTGTTCACGCAGCTGATTCAACTCGCGGATACGC ACCTCGACATGATGCAGATGGTCGCCGATCAGGGCGTCCACCTGGGCGCAGCCGGGTTCGCGGGTATCGCGCAGGGCCAGCAGGGCGCGAATCTCTTCCA GCGTCATGTCCAGCGACCGGCAATGGCGAACGAAGACCAGGCGCTCGACCCGGCTTTCGTCATAGCTGCGGTAGTTGCTGCTGCTGCGCGCCGCCGGACT CAGCAGCCCTTCGCGCTCGTAGTACCTGATGGTCTCGACGGCGCAATCGGTGCGCCTGGCCAATTCGCCGATCTTCATCATCCTGTCTCGTTGAGCTGAG
|
|
| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MQTSAPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVDEGNIRGVHPSVLAVTG PQQYEQVVSAVHEVVPPQLEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DLKYKLDFWNGQPVKTRMLELCEALSGMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKRWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVADEVKQERWERFMAHQQAISAARLQLKIGREIEVLIDEVDDQGAIGRSY ADAPEIDGNVYVDSASPLKPGDKVWVRVTDADEYDLWAEAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|