Pseudomonas sp. MOIL14HWK12:I1, PSEK12I1_RS0101265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I1 PseK12I1DRAFT_scaffold_1.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGGCTCGGTTGCCCTGAAAGAACGCATCAACGTCACGGTTCGACCCGCCAGCGGCGGTACCGAGGAAGAACTCGAACTGCCCCTCAAGCTCATGGTGC TGGGCGATTTCACCCAGCGAGCCGACGACCGCAAGCTCGAAGACCGCAAGCCGGTAGCCGTCGACAAGGACAACTTCGATGAGGTGATGGCCAAGCAGCA GTTGGGCCTGACCCTGGCGGTACCCAATCGCCTGCAGGACGACAGCCAGGACGATCTGGCCGTCCAGCTCGACCTCAAGGCCATGGCCGACTTCAGCCCG GCGCGGCTGGTGCAGCAGGTGCCCGAACTCAAGCAACTGATGGATCTGCGCGATGCCCTGGTGGCGCTCAAGGGGCCGCTCGGCAACGCCCCGGCGTTCC GCAGGGCCATCGAGCAGGTGCTCGCCGATCCGGTCGCCCGGGCCACGGTGCTCGGCGAACTCGGCTTGCCGAATCAAGACGTCTGATCAGGAAGATCATC
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| DNA Sequence for Gene |
>PSEK12I1_RS0101265
ATGACCGCTACCCTGCTCCCGCAACCCGCTGCCGACGTCGCTGAAGACCGCGGCATCCTCGACCGCATCATCGCCGAGACTCGCCTCGCGCCCCACGACG AGGGCTATGGCGTGGCCAAACGCGGCATCTCCGCCTTTATCGAAGAGCTGCTCAAGCCGCAAAACGCCCAGCAACCGGTCAAGAAGGCGCTGGTCGATCG CATGATCGCCGAGATCGATGAGAAGCTCAGCCGCCAGGTCGACGAGATCCTCCACCACGCGGAGTTCCAGTCGCTGGAGGCCGCCTGGCGCGGCCTGCAC CTGCTGGTGGAGCGCACCGACTTCCGCGAGAACAACAAGATCGAGATGCTCAACGTCTCCAAGCAGGATCTGCTGGAAGACTTCGAGGATTCGCCGGACA TCGTCCAGTCGGGCCTCTACAAGCACGTCTATACCGCCGAATTCGGCCAGTTCGGTGGCGAGCCGGTCGGCGCCATCATCGCCAACTACGACTTCGACCC CACCGCACCGGACATCCGCACTCTGCAACAGGTGGCAGCGGTCTCGACCATGGCTCATGCGCCCTTTATCGCCGCCGCCGGTCCGCGCTTCTTCGGCCTG GAAAGCTTTACCGGTCTGCCCGACCTCAAGGACCTCAAGGATCACTTCGACGGTCCGCAATTCGCCAAGTGGCAGAGTTTCCGCGAGCAGGAAGACGCGC GCTATGTCGGCCTGACCTTGCCGCGCTTCCTGCTACGCACGCCCTACGATCCGGAAGAGAATCCGGTCAAGACCTTTGCCTATCGCGAAAACGTCAGCCG GGACCATGCCCACTACCTCTGGGGCAACACCGCCTACGCCTTCGCCACCCGCCTGACCCACAGCTTCGCCACGTACCGCTGGTGTCCGAATATCGTCGGT CCGCAGAGCGGCGGCGCGGTGGAAGACCTGCCGCTGCATCACTTCGAGAGCATGGGCGAGATCGAGACCAAGATCCCCACCGAGGTGCTGATCTCCGATC GTCGCGAATACGAGCTGGCCGATGCCGGCTTCATCGCCTTGACCATGCGCAAGGGCAGCGACAACGCCGCCTTCTTTTCCGCCTGTTCGACGCAAAAACC CAAGTTCTATGGCAACAGCGAAGAAGGTCGGGCAGCTGAGCTGAACTACAAGCTGGGTACCCAGTTGCCCTATTTGTTCATCGTCAGCCGCCTGGCCCAC TACCTCAAGGTGCTGCAGCGCGAGCAACTGGGTGGCACCAAGGAGCGCACCGACCTCGAGCTGGAACTCAACAAGTGGATCCGTCAGTTCGTCGCCGATC AGGAAAACCCCAGCGCCGAGGTGCGCGGTCGTCGACCGCTGCGTGCCGCCAGCATCCGCGTCAGCGATGTCGAGGGTAATCCGGGCTGGTTCCGCGTGGG CCTGAGCGTGAGACCGCACTTCAAGTACCAGGGCGCCGATTTCACCCTGTCGCTGGTCGGCAAGCTGGACAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCTCATGAATTACGGCAGTCTGTTCGAACGCCTGGCCGGTCCGGGCAGCGCGCACAGCCGGGGCGCGTCCGCCGACGCCTTGAGCGCCTCGGTGGCCG CCCACCTGGCCAAGATGCTCAGCACCCGTGCCGGCAGCGTCCCGATCCAGGTCGACTACGGACTGCCCGACCTCAATGACTTGCGGCTGTCGCTGCACGA CTCGCTACAGCGTGCGCGGCTGGCCATCGAGGCGTTCGTGGCCGCCTACGAGCCGCGCCTGTCCGGTGTGAAGGTGCTGCCGCTGCAGCGGGAAAACACC ACCCTGGCGTTCGCCCTCGAAGGCCAGCTCGAGCTCGACGGCCAGCGGTGCCCCATCCGTTTCACCGCGAGCCTGGATGGCAGCGGCCAGGTCAAGGTCA GCCAGGGATAGGTCCATGTCCTTCAATCACTACTACCAGAGCGAGCTGGCCGAGTTGCGTCAGCTGGGCGCGCGCTTCGCCGAACGCAATCCTGCGCTGG
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| Amino Acid Sequence |
>type VI secretion protein
MTATLLPQPAADVAEDRGILDRIIAETRLAPHDEGYGVAKRGISAFIEELLKPQNAQQPVKKALVDRMIAEIDEKLSRQVDEILHHAEFQSLEAAWRGLH LLVERTDFRENNKIEMLNVSKQDLLEDFEDSPDIVQSGLYKHVYTAEFGQFGGEPVGAIIANYDFDPTAPDIRTLQQVAAVSTMAHAPFIAAAGPRFFGL ESFTGLPDLKDLKDHFDGPQFAKWQSFREQEDARYVGLTLPRFLLRTPYDPEENPVKTFAYRENVSRDHAHYLWGNTAYAFATRLTHSFATYRWCPNIVG PQSGGAVEDLPLHHFESMGEIETKIPTEVLISDRREYELADAGFIALTMRKGSDNAAFFSACSTQKPKFYGNSEEGRAAELNYKLGTQLPYLFIVSRLAH YLKVLQREQLGGTKERTDLELELNKWIRQFVADQENPSAEVRGRRPLRAASIRVSDVEGNPGWFRVGLSVRPHFKYQGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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