Pseudomonas sp. MOIL14HWK12:I2, PSK12I2_RS0120520 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I2 PsK12I2DRAFT_scaffold_0.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCACGCATGACGAAGGTGATGTACTTGAGGGTGACGACCCAGATGAGCGACCAGAAGATCAGCGACAGGATGCCGAGCACACTGTCGTGATTCAGCG GCAAGCCGTAGTGCGGCGAAAAGACTTCCTTGAGGGTATAGAGAGGACTGGTGCCGATGTCGCCGTATACCACACCGGTGGCGAGCACGATCATTCCCAA GGCCGAAGGGGCTTTACCACCGTGCTCGTGTTCCGGACGGCTCATGCAGGGCTCCTAGAGTCTAAAATCGGCGCATCCTGCGCCGAAGCGGCGTCAGGAT CAAGTTGAAAAGGCCGGTAGCGTGGCGCGCGCAACCTCTCAGCGCAGCGCTTCCAGCACCATAGACTCCTTGGTCGGCAAAAAGCTCTGCGCTGTCGCCA GGACCTGCCTGCCCCTTCCAAGCAGCGGCAGAGATGGCTAGAATCGCGCGTTTTTTGATCAAGGCGCCTCCTGAGCGCCCGCCGAGGTTAGCCCATGTCC
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| DNA Sequence for Gene |
>PSK12I2_RS0120520
|rimO
ATCCAAACGTCCGCCCCCAAGGTCGGTTTCGTCAGCCTCGGCTGTCCCAAGGCCACCGTCGACTCCGAACGCATCCTCACCCAGCTGCGCATGGAAGGCT ACGAGATCGTGCCGACCTATGAAGACGCGGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCCCTGGACGCCATTGGTGA GGCCATCGCCGAGAACGGCAAGGTGATCGTTACCGGGTGCATGGGTGTGGACGAGGGCAACATCCGTGGCGTGCATCCCAGCGTGCTGGCGGTGACCGGT CCGCAGCAGTACGAGCAGGTGGTCAGCGCCGTGCACGAGGTGGTGCCGCCGCAGCTGGAGCACAATCCGCTGATCGATCTGGTGCCGCCCCAGGGCATCA AGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCCTCCATGCGCGGCAAGCTGGTCAG CCGCCCGGTGGGCGACGTGCTGTCCGAGGCCGAGCGCCTGGTCAAGGCCGGCGTCAAGGAGCTGCTGGTGATCTCCCAGGACACCAGTGCCTACGGCGTC GACCTCAAGTACAAGCTGGACTTCTGGAACGGCCAGCCGGTCAAGACGCGCATGCTGGAGCTGTGCGAGGCGCTGTCGGGCATGGGCGTCTGGGTGCGCC TGCACTATGTCTACCCCTACCCCAATGTCGACGACGTCATTCCGCTGATGGCCGCCGGCAAGCTGCTGCCCTACCTGGACATCCCCTTCCAGCACGCCAG CCCCAAGGTGCTCAAGTCCATGAAGCGCCCGGCGTTCGAGGACAAGACCCTGGCGCGCATCAAGCGCTGGCGCGAGATCTGCCCGGAGCTGACCATCCGC TCCACCTTCATCGTCGGCTTTCCCGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTCACCGAGGCCCAGCTCGATCGCGTCGGCTGCTTCC AGTACTCGCCGGTCGAGGGCGCACCCGCCAACGAGCTGGGCCTGGAGCCGGTTGCGGACGAGGTCAAGCAGGAGCGCTGGGAGCGCTTCATGGCGCACCA GCAGGCCATTTCCGCCGCGCGCCTGCAGCTCAAGATCGGTCGCGAGATCGAGGTGCTGATCGACGAGGTGGACGACCAGGGCGCCATCGGCCGTTCCTAT GCCGATGCCCCGGAAATCGACGGCAACGTCTATGTCGACAGCGCCAATCCGCTGAAGCCGGGTGACAAGGTCTGGGTGCGGGTCACCGACGCCGACGAGT ACGACCTCTGGGCAGAGGCGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCTAGCTAGTCATGCAGGCGGTGGGTGCCGGGCACATGGGCGTGCCCGGCCGCACTGCAGCTGGCGGTGGTCGCCGATGGCGCCGCCGGCTGACCGAG TTCGCGCAGGATGCCGCAACGGTCCCCTTCGCCCTCTCCCTGGCAGTGGCGCCTCAGAGTCACCAGCTGTTCACGCAGCTGATTCAACTCGCGGATACGC ACCTCGACATGATGCAGATGGGCGCCGATCAGGGCGTCCACCTGGGCGCAGCCGGGTTCGCGGGTATCGCGCAGGGCCAGCAGGGCGCGAATCTCTTCCA GCGTCATGTCCAGCGACCGACAATGGCGAACGAAGACCAGGCGCTCGACCTGGCTTTCGTCATAGCTGCGGTAGTTGCTGCTGCTGCGCGCCGCCGGACT CAGCAGCCCTTCGCGCTCGTAGTACCTGATGGTCTCGACGGCGCAATCGGTGCGCCTGGCCAATTCGCCGATCTTCATCATCCTGTCTCGTTGAGCTGAG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MQTSAPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVDEGNIRGVHPSVLAVTG PQQYEQVVSAVHEVVPPQLEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DLKYKLDFWNGQPVKTRMLELCEALSGMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKRWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVADEVKQERWERFMAHQQAISAARLQLKIGREIEVLIDEVDDQGAIGRSY ADAPEIDGNVYVDSANPLKPGDKVWVRVTDADEYDLWAEAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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