Pseudomonas sp. MOIL14HWK12:I2, PSK12I2_RS0110430 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I2 PsK12I2DRAFT_scaffold_7.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCCTCGCGCTATCGCGATCTGGCCCGCACGGTCCATCCGGATCGCTTCGCCGATGCGCCGGAGCGCGAACGGCGCCAGGCGCTGGAGCGGTCGGCCGA GCTCAACGAGGCCTATCACGTGTTGCGCGCTCCGTCGCGCCGCGCGCGCTATCTGCTGGAGCTCGAAGGGCACGAGATGCCGCTCGAGGCGACCATCCAG GACACCGACTTCCTCATGCAGCAATTGCAGTGGCGCGAGGAGTTGGAAGACCTGCAGGACGCCGGCGACAGCGCGGGCATTCCCGCCTTCCGCCAGCGCC TCAAGGATGCGCAGCGTGACATCGAGCAGGCCTTCGCCGCGATCTGGCAGGATCCCGCCCAGCGCGAGTCTGCCGAGCGCTTGGTCCGTCGCATGCAGTT TCTCGACAAGCTGGCCAGCGAGATCCGCCAGCTCGAAGAGCGTCTGGACGATTAATCACAGGTGTCGCTCCGGCACCGACAACCATAAGCCGACTAGCCA
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| DNA Sequence for Gene |
>PSK12I2_RS0110430
|hscA
ATGGCTCTATTGCAGATAGCCGAACCCGGAATGGCGCCCAAGCCGCACCAGCGCAAGCTGGCGGTGGGCATCGATCTGGGCACCACCAATTCCCTCGTGG CCGCCGTCCGCAGTGGCGTGGCCGAGACCCTGCCCGATCTGCAGGGCGAGGTGATCCTGCCGTCCGCCGTGCGCTACGCCGCCGCTGGCGTGGAGGTGGG GGCGGGCGCCAAGGCCGCTGCCGCCCATGACCCCTTCAATACCATTCTTTCCGTCAAGCGCCTCATGGGGCGTGGCATCGCCGACGTCAAGCAGCTGGGC GAGCAGTTGCCCTATCGCTTCGTCGCCGGTGAATCGGAAATGCCCTTCATCGATACCGCTGCCGGGCGCAAGAGTCCGGTAGAGGTCTCCGCCGACATCC TGCGGGTGCTGCGCGAGCGCGCCGAAGCCACCCTGGGTGGCGAGCTGGTCGGCGCCGTCATCACCGTGCCGGCCTACTTCGACGACGCCCAGCGTCAGGC GACCAAGGACGCGGCCCGCTTCGCCGGCCTGAATGTTCTGCGCCTGCTCAACGAACCCACCGCGGCGGCCGTGGCCTATGGCCTGGACCGGGGCGAGGAG GGCGTGGTCGCCATCTACGACCTGGGTGGCGGCACCTTCGACATCTCCATCCTGCGCCTGACCCGTGGCGTCTTCGAAGTCATGGCCACCGGTGGCGACA GCGCCCTGGGCGGTGACGACTTCGATCACGCCATCGCCGGCTGGATCGTCCAGCAGGCCGGGTTGTCCAGCGATCTGGATCCGGGCACCCAGCGCCGCCT GCTGCAGAGCGCCTGCGCCGCCAAGGAAGCCCTGTCGGCCGCCGAGCGCGTCGAGGTCAGCCACGGCGACTGGTCGGGCGTGTTGGACCGCGGCACCTTC CAGGCACTCATCGCACCCCTGGTCGCGCGCAGCCTGAAGGCCTGTCGCCGTGCCCTGCGCGATGCGGACGTGGAGCCGGCGGATATCCGCGCCGTGGTCA TGGTCGGCGGTTCCACCCGCGTGCCCTATGTCCGTGAAGCCGTGGGTGAGCTGTTCGACTGCACCCCGCTCACCGACATCGATCCGGATCGCGTGGTCGC CATCGGCGCCGCCCTGCAGGCCGATTCCCTGGCCGGCAACCGCGCCGGCGAAGAACTGCTGCTGCTGGACGTCATCCCGCTGTCCCTGGGACTCGAGACC ATGGGCGGCCTGATGGAAAAGATCATTCCGCGCAACACCACCATCCCGGTGGCGCGGGGTCAGGATTTCACCACCTATCGCGACGGCCAGACCGCCATGC TGGTGCATGTGCTGCAGGGCGAGCGCGAGCTGGTCAAGGACGCCCGTTCCCTGGCGCGCTTCGAGCTGCGTGGCTTTCCGCCCATGGTCGCCGGGGCCGC CAAGATCCGCGTCACCTTCCAGGTCGATGCCGACGGCCTGCTCGGCGTTAGCGCCCGCGAGCTGTCCAGCGGCGTGGAAGCCAGCGTCCAGGTCAAGCCG TCCTATGGCCTGACCGATGGCGAGATCGCCAACATGCTGCAGGACTCCTTCCGCCATGCCGGAGACGACATGCAGGCCCGCGCGCTGCGCGAGCAGCAGG TCGAGGCCCGGCGGCTGATCGAGGCGGTCACCGCCGCGCTGGCCGCCGATGGCGAGCGCCTGCTGGACGCCGAGGAGCGTCAGGTGATCGAGCTGGAAAT CGGCCGGCTGGCCGAGCTGCTGGACGCCACCGACGTCCAGGCGCTCGAAGACCAGACCAAGCGTCTTTCTCACGTAACCGATGCCTTCGCCGCCCGGCGG ATGAACGCCTCGGTCAAGGCGGCCCTGGCGGGTCGTCGTCTCAACGATATCGAGGAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCATCATGCCGCAGATCACCCTGCTGCCCCACGCCGAGCACTGCCCCGAGGGCGCGGTCTTCGAAGCCAGCGAAGGCGAAACCATCATCGCCGCGGCC CTGCGCAACGGCATCGACATCGAGCACGCCTGCGAGATGTCCTGTGCCTGCACCACCTGCCACGTGGTCATCCAGGAAGGCTTCGACTCCCTCGAGCCTT CCGATGAACTCGAGGACGACATGCTGGACAAGGCCTGGGGTCTGGAGATGCGTTCGCGCCTGTCCTGCCAGGCGGTAGTTGGCAGCGAAGACCTGGTGGT GGAGATTCCGCGCTACACCATCAACCAGGTTTCCGAAGGTCACTGAGGACAGCTGTCATGGCACTGAAATGGACCGATGTGCTGGATATCGCCATCGAAC TCAACGACGCCCATCCCGACGTGGATCCGCGCTACGTGAATTTCCTCAAGCTGCGCAACTGGGTCGTGGAGCTGCCGGAATTCGACGACGATCCCCAGCG
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGMAPKPHQRKLAVGIDLGTTNSLVAAVRSGVAETLPDLQGEVILPSAVRYAAAGVEVGAGAKAAAAHDPFNTILSVKRLMGRGIADVKQLG EQLPYRFVAGESEMPFIDTAAGRKSPVEVSADILRVLRERAEATLGGELVGAVITVPAYFDDAQRQATKDAARFAGLNVLRLLNEPTAAAVAYGLDRGEE GVVAIYDLGGGTFDISILRLTRGVFEVMATGGDSALGGDDFDHAIAGWIVQQAGLSSDLDPGTQRRLLQSACAAKEALSAAERVEVSHGDWSGVLDRGTF QALIAPLVARSLKACRRALRDADVEPADIRAVVMVGGSTRVPYVREAVGELFDCTPLTDIDPDRVVAIGAALQADSLAGNRAGEELLLLDVIPLSLGLET MGGLMEKIIPRNTTIPVARGQDFTTYRDGQTAMLVHVLQGERELVKDARSLARFELRGFPPMVAGAAKIRVTFQVDADGLLGVSARELSSGVEASVQVKP SYGLTDGEIANMLQDSFRHAGDDMQARALREQQVEARRLIEAVTAALAADGERLLDAEERQVIELEIGRLAELLDATDVQALEDQTKRLSHVTDAFAARR MNASVKAALAGRRLNDIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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