Pseudomonas sp. MOIL14HWK12:I2, PSK12I2_RS0104045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I2 PsK12I2DRAFT_scaffold_3.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCTCCTGGCCTTCCTGGTGCTGGCCGCCCAGTACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCCATGACCCTGCTCTCGGCCATCA CCGGGGTGATCCTGGCCGGCAGCGACAACAACATCTTCACCCAGATCGGCCTGATCGTGCTGGTGGGCCTGGCGTGCAAGAACGCCATCCTCATCGTCGA GTTCGCCAAGGACCAGCAGGCCACCGGCAAGGACCGCGTCGCCGCGGTGCTGGAGGCCTGCCGCCTGCGCCTGCGACCCATCCTGATGACCAGCTTCGCC TTCATCATGGGCGTGGTGCCCCTGGTGACCTCCACCGGCGCCGGCGCCGAGATGCGCCACGCCATGGGCGTCGCGGTGTTTTCCGGGATGCTCGGGGTGA CCTTCTTCGGTCTGCTGCTCACGCCGCTCTTCTATGTGCTGGTACGCGCCTTCGTGGAGCGTCGCCAGGCTCGCTCCGCCGTTGCCCAGGAGGCCCAGGC
|
|
| DNA Sequence for Gene |
>PSK12I2_RS0104045
ATGAAGGCTTTCGCTCCCCTGCTGCTGGCGCTGGCGGTCTCCGCCTGCGCCGTCGGCCCGCACTACCAGGCGCCTGAGCAGGCACCCGTCCAGCTCAAGG CCAGCCAGCAGCCCAGCGCCTACGACCAGGGCCGCTTCGAGGCGCTCTGGTGGCGCCAGTTCGAGGACCCGACCCTCAACGCCCTGGTGGCCAGCAGCCT GGACGGCAACCGCGAATTGCGCGCCGCCTTCGCCCGGCTGCGCGCCGCCCGCGCCCTGCGCGACGACGACGCCAACGACCTCTATCCGACGGTCACCAGC CGTGCCAGCAGCCAGCTCGGCAAGGCCCAGCAACCCGGTTTCACCGAGGAACGGGTCAACAGCGACCGCTACGACCTGGGTCTGGACATGGCCTGGGAGC TGGACCTGTTCGGGCGCGTCCGCCATGCCCTGGAAGCCAGCGATGCCCGCGCCGAGGCCGCGGCGTCGGATCTCGCCGCGCTGCAGGTCAGCCTGATCGC CGAGCTGGTGGATGCCTATGGCGATCTGCGCGGCGCCCAGCTGCGCGAACGCATCGCCCGCGACAACCTCGGCAACCAGCGCGAAGCGCGCCGCCTGACC GTGACCCTGAGGGACGAAGGCATGGGCAGCGACCTGGACGTGCAGCGCAGCGAAGCGCGGCTGGCGGCCACCGAAGCCAGCCTGCCGGAATTCCAGGCCC AGGCCACCCGCGCGCGCAATCGCATCGCCACCCTGCTCGGCCAGCGCCCGGATGCCCTCAGCGTGGATCTCTCACCCAAGGCCCTGCCGGCCATCGCCAA GCGCCTGCCCATCGGCGATCCCGGCGAATTGCTGCGCCGCCGTCCGGACGTGGCCGCCGCCGAACGCCGGCTGGCCGCCGCCACCGCCGACGTGGGCGTG GCCACCGCCGATCTCTTCCCGCGGGTCAGCCTCTCGGGCTTTCTCGGCTTCACCGCCGGGCGCGGTTCGCAGATCGGCAGCAGCGCCGCCCGGGCCTGGG GACTCGGCCCGAGCATCACCTGGCCGGCCTTCGACCTGGGCAGCGTCCGTGCCCGCCTGCGCGGCGCCCGCGCCGGCTCCGAAGAAGCCCTGGCCAACTA CGAGCAGCAGGTGCTGACCGCCCTGGAAGAGAGCGCCAACGCCTTCAGCGACTACGGCCGTCGCCAGGAGCGCCTGCAGGCGCTGATCCGCCAGTCGGTG GCCAGCCGCGCCGCCGCCGACCAGGCCGAGATCCGCTACCGCGAAGGCGGCACCGACTTCCTGGTGCTGCTCGATGCCCAGCGCGAACGCCTGGCCGCCG AAGACCAGCAGGCCCAGGGCGAGATCGAGCTCTATCGCGGCATCGTCGCCCTCTACAAGGCCCTGGGTGGCGGCTGGGACGTGCAACCCGCGCGTCTCGC CCAGGGCAACGCTTCCCCCGCGCCGGCGCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCGGCGCTTACCCCCGGCACGCGTGTTCCCCTGCTCCTTTGGCGTGTCGGTTTTTTTCTTCCCCCCGCCCCGCTGCGACGCCCCTGGCACCGTAGCGG GGCACCCCCTGCCCGGCGACGCGAGCAAAAGCCCGTTGCAGAGGTCTCAAAGAGGTCCGGGCCTCTGCCCGCCGGTGTCTGCCTCCCAGGCTGGACGCCT TGCGGCTGTTTCCTAATATTTTGTAAGGGAGACAGGCCTAGGAATCTGTGGTCTCTCTTTTATTATCACCTTAGGTTATTAAACCGCCGGTTCTTGTACG AAACTCAGAGATCGCTTCGCGCGCCCCTTGCCGTCCCGGCAAGCGTCCCGGCGCGGGGATCGAATGCCGCTCGAGGCCTCTAGGGAGCCCCATCTACCAA CCGCCGTGAGGCGGCTCAGCTAAAGGATGCAGGCATGGTATTGGCGCTGATCATCGCGTTGCCCTTCCTGGGAACACTGCTGTCGCTGGCGACCGATCGC
|
|
| Amino Acid Sequence |
>RND transporter
MKAFAPLLLALAVSACAVGPHYQAPEQAPVQLKASQQPSAYDQGRFEALWWRQFEDPTLNALVASSLDGNRELRAAFARLRAARALRDDDANDLYPTVTS RASSQLGKAQQPGFTEERVNSDRYDLGLDMAWELDLFGRVRHALEASDARAEAAASDLAALQVSLIAELVDAYGDLRGAQLRERIARDNLGNQREARRLT VTLRDEGMGSDLDVQRSEARLAATEASLPEFQAQATRARNRIATLLGQRPDALSVDLSPKALPAIAKRLPIGDPGELLRRRPDVAAAERRLAAATADVGV ATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWGLGPSITWPAFDLGSVRARLRGARAGSEEALANYEQQVLTALEESANAFSDYGRRQERLQALIRQSV ASRAAADQAEIRYREGGTDFLVLLDAQRERLAAEDQQAQGEIELYRGIVALYKALGGGWDVQPARLAQGNASPAPAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|