Pseudomonas sp. MOIL14HWK12:I2, PSK12I2_RS0102280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MOIL14HWK12:I2 PsK12I2DRAFT_scaffold_1.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGTCGCGGTAGCCGTTGTCCAGCACCAGGTCCAGCTGGATGGCGGGATGGGCGGCGCGACAGGCCAGTAGCACCTCGAAAAAGGTGTAGCCCAGGGAC ACCGGCACGGTCAGGCGCACCGGGCCGACGGCTTGCTCCTGCAGCCGGGCCACGCTCTGCAGGGCCCGCTCGCGCTGGCGCACCAGGGCCTGAGCCTCCG GGAGCAGGGCACGACCGGCGGGGGTGGGATCGAGGCGTCGGGTGGTGCGGTGCAGCAGCTTGGTCTCCAGGCGCATCTCCAGCGCCCGGATGCGCTTGGA CAGCTGGCCCTTGCTGCAGCCCAGGCGCTCGGCCGCACGGGTGAAGCTGCCGCTGTCACAAAGGATGGCGAAGGCGGCGAGATCGGCGAAGTCGTCCTGC ATCGTTTCCCCCTGGAAACACTGGATTGCCATTCAGGCGATTTATCCGGGCAATGGGCCATTCTAGGCTGAGGACTCCTTTCCCTTCACGGAGCCACCCC
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| DNA Sequence for Gene |
>PSK12I2_RS0102280
ATGAAAATCATCCTCGTCGGCGCCAGCGGCACCCTGGGCAGCGCCATCGCCGAACGCCTGGGCAGCCGCCATGACCTGATCCGCGTCGGCCGCCGATCCG GCGACCTGCAGGTCGACATCACCCAACCCGAGTCCATCCGTGCCCTCTTCGCCCAGGTGGGTCGTTTCGACGCCCTGGTCAGCGCGGTGGGTTCGGTGAC CTTCGCCCCCTTCACCGAGATGACGCCCGAGGCGTACCAGAAAGGCCTGCAGGACAAGCTCATGGGCCAGGTCAATCTGGTGCTGCTCGGCCAGCAGCAG GCCGCCGAGGGCGCCTCCTTTACCCTGACCACCGGCATCCTCAGCGAACAGCCCATCGCCCAGGGCAGCTCGGCGGCCATGGTCAACGCGGCGCTGGAAG GCTTCGTGCGCGGTGCGGCCATCGAGTTGCCCCACGGTCAGCGCCTCAACGCGGTCAGCCCGACGGTGCTGCAGGAGTCCCTGGGCCACTACGGTGATTT CTTCCGCGGTTTCAAGGCGGTCAGCGGCGCCGAGGCCGCTCTGGCCTACGAACGCAGTGTGGAAGGACGAGAAACCGGCAAGACGTATCGCGTCTGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCTTGAGCTCGCGGCGCTGTCTGAGTAACGTGTGCCCACCTCAGTCGGAGTCCTGCGATGCCAGCGCCGCGTGCCATCTTTCCCCTAGCCCTGCTCGG CCTCCTCGGCGGCTGCAGCCTGTTCCAGAGCGACGACACCCCGCGTGCACCGGGCGGCGAGCGCCTGCAGGGCGATCTGCGCTGGAGCGGTGACCAGCTG CTGTTCCGCCCCTGCCAGGAACAGCGTTTCTTCGACGTCACCGACGCCAACAACACCGCCATCCTGCGCGATGCCCACGAACTGGCCGCCGACAGCGGCG CCGCTTCGCTGTTCGCCGACCTGCGCGGCAAGCTCAAGTCCGGCGGTCGCGATGGTGCCCAGGGCGTGTTCGCCGTCACCGATGTCTACCGCGTGCAATA CAGCGGACCGGGTTGCAGCGATCCCAACTTCAAGCGCACCGCCATGAACGCCGGTGGCCATGGACCGGACTGGAGCGTCCAGGTCAGCAACCAGGGCATG
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| Amino Acid Sequence |
>short-chain dehydrogenase
MKIILVGASGTLGSAIAERLGSRHDLIRVGRRSGDLQVDITQPESIRALFAQVGRFDALVSAVGSVTFAPFTEMTPEAYQKGLQDKLMGQVNLVLLGQQQ AAEGASFTLTTGILSEQPIAQGSSAAMVNAALEGFVRGAAIELPHGQRLNAVSPTVLQESLGHYGDFFRGFKAVSGAEAALAYERSVEGRETGKTYRVW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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