Strain | Pseudomonas oleovorans MOIL14HWK12 PsoK12DRAFT_scaffold_0.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGTCAGCCACCAGCCCTGGACCACCGAAGACCTGGCTCGCTTCACCCGTCTGGTGCAGGATGCCGTGGGCTTCGACGCCAGCCGTGGCGACAGCGTGAGC GTGATCAATGCGCCCTTCGCCCCGGTGCAGCAGGAAGAGATCGAGAGCATTCCCTTCTACCAGCAGCCCTGGTTCTGGGGTGTGGTCAAGCAGGCCCTCG GCGTCCTCTTCATCCTGGTGCTAGTCTTTGGGGTGCTGCGTCCGGTGCTGAAGAACCTGTCCGGCGGCAACACCAAGGACGCCGCTGCCCTGGCCGCTGC CGGTGGTGCCGGTGCCCTGGGTGCCGGCGGTCTGGATGGGCTGTCGGACGATCTGGCCGACGACAAGGTGAGCCTGGCCGGGCCTGCGCCGCTGTTGCTG CCCAGCCCCAGCGAGGGTTATGACGCTCAACTGACCGCCATCAAGCAGCTGGTCAACGATGATCCGGGCCGTGTCGCCCAGGTAGTGAAGGATTGGATCA
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DNA Sequence for Gene |
>PSOK12_RS0108930
ATGGCGACGAATGACGCGCAACTTTCCAAGGTCGAGAAGGCCGCGATCTTCCTCCTGTCGCTGGGTGAGGCCGATGCCGCGCAGATCCTGCGCCACATGG GACCCAAGGAGGTACAGAAGGTCGGTACCGCCATGGCGCAGATGCGCAACGTCAACCGCGAGCAGGTCGAGCGGGTACTGGGCGACTTCATCGAGGTGGT GGGCGACCAGACCAGCCTGGGCGTGGGCGCCGACGGCTACATCCGCAAGATGCTCACCCAGGCCCTTGGCGAGGACAAGGCCAGCGGCCTGATCGACCGC ATCCTGCTGGGCGGCAACACCAGCGGCCTGGACAGCCTGAAGTGGATGGAGCCGCGGGCGGTGGCGGACGTGATACGCTACGAACACCCGCAGATCCAGG CCATCGTGGTGGCCTATCTTGACCCGGACCAGGCGGCCGAGGTGCTCGGTCACTTCGATCACAAGGTGCGCCTGGACATCGTCCTGCGCGTTTCCTCGCT GAACACCGTGCAACCGGCGGCGCTCAAGGAGCTGAACCTGATCCTGGAGAAGCAGTTCTCCGGCAGCGCCAGCACCACCCGTACCGCCCTGGGCGGCGTG AAGCGCGCCGCCGACATCATGAACTACCTGGACAGCTCGGTCGAAGGCCCGCTGATGGATGCGATCCGCGACGCGGACCAGGATCTGTCGGGGCAGATCG AGGACCTGATGTTCGTCTTCGACAACCTGGCCGACGTCGACGACCGCGGCATCCAGGCGCTCCTGCGCGAGGTGTCTTCCGATGTGCTGGTGCTGGCGCT CAAGGGCGCCGACGACGGCATCAAGGAGAAGTTCTTCCGCAACATGTCCAAGCGCGCGGCCGAGCTGCTGCGCGACGACCTGGAAGCCAAGGGCCCGGTG CGACTGTCCGAGGTGGAGGGCGCGCAGAAGGAGGTCCTCGCCGTCGCTCGTCGCATGGCCGATGCCGGCGAGATCGTTCTGGGCGGCAAGGGTGGCGAGG AAATGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGGCTTGCCGGGGTTGGCCTGTGCTTTGCTAATGTCTGCTCAGTAGCGGTTTTCTGACGGACAGGTAATGAGCAAAGAAGCGGCGAGCGAACTGATCAGG GCGCGGGATCTGGAAGCCTTCGATGTCTGGCGACTGCCGGCCTTCGACAGTTTCGACGAGCCCGAGGAGATCCCTGCGCCCGCGGCGGCAGAGCCCGAGC CCCAGCCGGAGCCGCAGATCGAAGAGGTGCCGGTCGAAGAGGTCCAGCCGATCACCCTCGAAGAGCTGGAGGCGATCCGCCAGGAGGCCTACAACGAAGG CTTCGTCACCGGCGAGCGCGACGGCTACCACGCCGGTCAGCTCAAGGCGCGCCAGGAAGCCGAGGCGGCGCTGGCCGCCCGGCTGGCCAGCCTGGAAACC CTGATGAGCCATCTGCTCGATCCCATCGGCGAACAGGACCAGGCCCTGGAAGCCGGGATGGTGCAGCTGGTCCGGCACATCACCCGCGAAGTCATCCAGC
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Amino Acid Sequence |
>flagellar motor switch protein FliG
MATNDAQLSKVEKAAIFLLSLGEADAAQILRHMGPKEVQKVGTAMAQMRNVNREQVERVLGDFIEVVGDQTSLGVGADGYIRKMLTQALGEDKASGLIDR ILLGGNTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDPDQAAEVLGHFDHKVRLDIVLRVSSLNTVQPAALKELNLILEKQFSGSASTTRTALGGV KRAADIMNYLDSSVEGPLMDAIRDADQDLSGQIEDLMFVFDNLADVDDRGIQALLREVSSDVLVLALKGADDGIKEKFFRNMSKRAAELLRDDLEAKGPV RLSEVEGAQKEVLAVARRMADAGEIVLGGKGGEEMV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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