Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0126990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_3.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATAGTAGGCACCAATGACGCAAATGCTCAAGGCACGCCTGTCATCGAAGGGGTAAACCTCGTCCGGTTTATCGATTGAGCGCCATCGTCGCGCTGTAGTC GGTCACGGTGCAATAGCTGAACATCGCCAGTTGTTGAGTCTTGAGACGAGCGCGCGTAGTTAAAGTCACCGCCAATACCAATAAAGATGCCTGGGGCATT GCACAAAAAATGTACAAAAGTGTAGGTGAATCAATAAACAACGGTGTTAGCGAGGGCTGCCAGAGTTCTCCGTCGCCACGGAACTTTTTTTCGTTGACGC GCTCCAGCAAAGGGCTTCGGGCTGTATATTTTTTAAACACCCCTTAGAAAAGTTGCTCGAAAAAGAATCACCGCCTACAATTTTTTTGCTTCTTGCGCTA CGTCAGTTTACTTACTACAAGTAATGGGTAGTATGTACGCCGGCTAACTCCTCAGTCTGGGGAGACAGTCACTAATAGAATGTCCTTGAAGGGGAACACG
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| DNA Sequence for Gene |
>PSBVI21_RS0126990
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCCCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGCATCGAAAGAAACCGAAGCACGTCTGACTGCTA CCGAAGACGCAGCAGCTCGCTCCCAGGCTCGTGCAGACGAAGCTTACCGTAAAGCTGATGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA CGAAGCTAACGAGCGTGCTCTGCGCATGCTGGACAAAGCTAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGTCCTTCGGGATTGTTATCGAGCCGACCCATTTTTGGGTCGGCTTTTTTTTTGGGTTCGAGAGCTATTGCCCGGTGTTTTCCCAAGCAATAAAAAACC CGCCGACATCGCGAAACGTCGGCGGGTTGTTGTCGAGTCTTTTACTGCTGCAAGTCGATCGGCGCGCTCGTGACCATCGGTGCCGAGGTATTCGGAACAG CGATTTCCACCGGCATGCCATCTTCGGCCGCCACCACGTCCCGCACCACGTCCCAGTTCATGCGCAAGTTGCTGGTGATGTCTTCACGCTTGAGCATCGC GTTGATCACTGAGGTGTGCTTGTCCACCACCGACGGGTTGCCCTTGTCGTCCAGCGGTGTGTGAGCTTCCAGGTACACCTTGCCACCGCTCAAGCCCAGC TTGTAGGGGTCGTTGATGATCCGCACCGATGTCCCCACCGGCACCATGCCGGCCATTTCCAGCACGTTGTTGTTGAACATCCGGAAGCAACCGTGGCTGG
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| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSASKETEARLTATEDAAARSQARADEAYRKADEALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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