Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0124680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_14.15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGCCAACGATTCCTGGAAATCTGGTCCGGGTTGCCGGTGCTGTACCTGCTGATCATCCTGGCCAGTTTCGTCCAGCCCAACTTCTGGTGGCTGCTG GGCATCATGCTGCTGTTTTCCTGGATGAGCCTGGTGGATGTGGTCCGTGCCGAGTTCCTGCGCGGGCGCAACCTGGAATACGTGCGAGCTGCCCGGGCGC TGGGCATGCAGAACGGCGCGATCATGTTCCGCCACATCCTGCCCAACGCCATGGTCTCGACCATGACGTTCATGCCGTTCATCCTCACCGGCGCCATCGG CACCCTCACCGCCCTGGATTTCCTCGGCTTCGGCCTGCCGCCAGGCGCGCCGTCCCTCGGCGAGCTGGTGGCCCAGGGCAAATCCAACCTCCAGGCGCCA TGGCTGGGCATCAGCGCGTTCGCCGTGCTGGCCCTGATGTTGAGCCTGTTGGTGTTCATCGGCGAGTCCGCTCGCGATGCCTTCGATCCGAGGAAGTGAA
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| DNA Sequence for Gene |
>PSBVI21_RS0124680
ATGAACCAGGACAATCTGATCGAAGTACGCGACCTGGCGGTGGAGTTCATTGTCGGCGAACGCCGCCAGCGCGTGGTCGAGGGGGTCAGCTTCGATATCA AGCGCGGCGAAACCCTGGCCCTGGTGGGTGAAAGCGGCTCGGGCAAATCGGTTACCGCCCATTCGATCCTGCGGTTGCTGCCTTACCCGCTGGCCCATCA CCCCACCGGGACCATCCAGTACGCCGGCCAGAATTTGCTGGGTTTGAAGGAAAAAACCATCCGTCATATCCGCGGCAACCGGATCGCGATGATTTTCCAG GAGCCGATGACATCCCTCAACCCGCTGCACTCCATTGAAAAACAGATCAATGAAGTGCTCGGCATCCACAAGGGCCTGAGCGGCAAGGTCGCGACCCGCC GGACCCTTGAGTTGCTGGAGCTGGTTGGCATTCCCGAACCCCACAAGCGCCTCAAGGCCCTGCCCCACGAGCTATCCGGCGGCCAGCGCCAGCGGGTGAT GATCGCCATGGCCCTGGCCAACGAGCCGGAACTGCTGATTGCCGACGAGCCGACCACCGCGCTGGACGTCACCGTCCAGTTGAAAATCCTCCAATTGCTC AAGGAATTGCAGGCGCGATTGGGCATGTCGCTGCTGCTGATCAGCCACGATTTGAACCTGGTGCGAAGAATTGCGCATCGCGTATGTGTCATGCAGCGCG GTTGCATCGTCGAACAGGCATCGTGCGAAGAGTTGTTCCGGGCACCGCAGCATCCGTACACTCGGGAACTGCTGGGCGCTGAACCCAGCGGCACCCCGGC GAGCAACGTCGTCGGCCCGCCGCTGTTGCAGGTCGAGGACCTGAAAGTCTGGTTCCCGATCAAGAAAGGCCTGTTCAAGCGCACGGTAGACTACATCAAG GCCGTGGACGGTATCCGCTTCAGCCTGCCCCAGGGCCAGACCCTGGGCATCGTCGGCGAAAGCGGTTCCGGCAAATCCACCCTGGGGCTGGCAATCCTGC GGTTGATCGGCAGCCAGGGCGGGATCCGTTTCGAAGGCAAGCAGCTGGATAGCCTGACGCAGCAACAAGTCCGGCCGCTACGCCGGGAGATGCAAGTGGT GTTTCAGGACCCGTTTGGCAGCCTGAGCCCACGGATGTGTGTGAGCCAGATCGTCGGCGAAGGCCTGCGGATCCACAAGATCGGCACCGAAGCCGAACAG GAACAAGCGATAATAGCGGCATTGAAGGAGGTAGGCCTGGACCCGGAAACCCGGAACCGCTACCCCCATGAATTTTCCGGAGGGCAACGGCAGCGTATCG CCATTGCCCGGGCCCTGGTGCTCAAGCCGGCGTTGATTCTGCTGGATGAACCGACGTCGGCCCTGGACCGTACCGTGCAACGCCAAGTGGTGGAGCTGTT GCGGTCGTTGCAAACCAAGTACAACCTGACGTACCTGTTTATCAGCCATGACCTGGCTGTCGTCAAAGCGCTGAGCCACCAGTTGATGGTGGTCAAGCAT GGCCAAGTGGTCGAACAAGGTGATGCCCGCAGCATATTCGCCGCGCCGCAGCACCCCTATACACAGCAGTTGCTGGAGGCCGCCTTCCTGGCCCCAACAA CTGCCGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGAAAGAGGAGCAACACATGGGTTTTCTCGCCGGTAAGCGCGTACTGATCGTCGGTGTCGCCAGCAAGCTGTCCATCGCATCCGGCATCGCCGCCGCC ATGCATCGCGAGGGCGCTGAGCTTGCCTTCACTTATCAGAACGACAAACTCAAGGGTCGTGTCGAAGAGTTCGCACAGGGCTGGGGTTCGAGCCCTGAGC TGTGCTTCCCGTGCGACGTGGCCAGCGATGAAGAAATCGCCAAGGTCTTCGAAGAACTGAGCAAGAAGTGGGACGGCCTGGACTGCATCGTGCACTCCGT GGGCTTCGCCCCGGGCGACCAACTGGACGGCGACTTCACCGAAGCCACCACCCGCGAAGGTTTCCGCATTGCCCACGACATCAGCGCCTACAGCTTCGTG GCCCTGGCCAAGGCCGGTCGCGAAATGATGAAAGGCCGCAACGGCAGCCTGCTGACCCTGTCGTACCTGGGCGCCGAGCGCACCATGCCGAACTACAACG
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| Amino Acid Sequence |
>microcin C ABC transporter ATP-binding protein YejF
MNQDNLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLAHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQ EPMTSLNPLHSIEKQINEVLGIHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILQLL KELQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEELFRAPQHPYTRELLGAEPSGTPASNVVGPPLLQVEDLKVWFPIKKGLFKRTVDYIK AVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGGIRFEGKQLDSLTQQQVRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQ EQAIIAALKEVGLDPETRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKH GQVVEQGDARSIFAAPQHPYTQQLLEAAFLAPTTAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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