Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0124460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_14.15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGAAACCTTGCTGTTCAGCCCCTGGCCCGGACAACTGGCCTGGCAGCAGCACCCCCTCGAATCACGCATGTATGCCAGTCGCCAGGCCGGCGAGCGCT TGCCGGCGGCGATCAAGAAACTGCTGGACGAGCAGATGCCCGGCACCCGGGACCTGGCGAATGTCTACCTGCAATGCCTGATCCTCGGGTTCCAGGGCCG GTTGCGCGGCGAGCCTGGCCAGGTTCAGCATGAGAAATGGCGCCTGGCGTTGTTCACGTTTGCCTGGCAGCACGAACCCGATTATGTCGATGTCAGCCAG CGCCTGGCGCTGTCTTCGGCGACGCCGCCAGTGCGCATGCCGGTGCAGCAATCACTGCCGGACGGCTTTCGCCTGGGGCTGGCGATCCTGGCGATGGTGT TGTTGTTGACCGGGCTGGGGCAGGTGTTCTGGCGTGACATTCGTTTGGAGCTCGAACCGGTGCTGCAACTGAACGAGTCGGTGGTTCAGGAGCAGGACTC
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| DNA Sequence for Gene |
>PSBVI21_RS0124460
ATGAGCACCCTGAGTATCGTTGCCCTGGTGGTGCTCGCCATCGTCGTGGTGCTGTTGATCGCGGCCCTGATCTGGTGGCTGCGGACCCAAGGCGGAGCGG CGATCCGCAGTTTCTATGGGGCGGTGCGCCGCATGGAACAGGAGCAGGGCACCCGGGACCGCTATCAGATGCCTTGGCTGATGATGCTCGGTAACGAAAG CGACGGCGCCCAACTGTGCGCCCAGTGGCGCTTGCAACCGACCGACAAGGCCGCCTGGTTCGGGCGCTGGTTTTCCGATGCCGAGGGCTCGGTGCTGGTG GTGCCCCAGGCGTTGTTCCTGCCCGATGAAGGCATGAACCGGCAACGGGGTAATTGGTGGCGCCTGTTGGGGCTGATGTTGCGCTTGCGCAGCAAGCGAC CATTGGATGCGGTGATCTGGACGGTGCCGTTCAGCACCCTCGATGACATCGAACACACCACCGAACTGAGCCTCAAGGTCCGGCGGTGCTTTATCGACCT GTTGCAACGGTTCGGCCTCAGCCTGCCGGTGTACGTGGTGATCACCGGGATGGAAGAGCTGCCCGGGGTCCAGGAACTGGTCAGCGCGCTGCCCGCCGAG GCGCGTGAATCGATGCTGGGCTGGTCCTCGCCCTATTTGCCGGATGCGGCCTGGCAGTCGCAGTGGAGTGACCAGGCCCTGGACCAGGTCAACGCGGCGC TGTCGCAATCGATCATCGAGATCGGTGCGCTGTCGGGGCAATTGGGCAGCAATCTGTATGGGTTGCCGGAGCGCTTCGAAGGCTTGCGACGGGCCTTGCA GATCCTGTTGGAGCCGGTGTTCCAGGGCAATGCCCAAGGCGAAGCGCCGCGTTGTCGCGGGGTGTATTTCACTGCCAGCCAGGCGCCGGCTGTCAGCGGT GATGGTTTGACCGCCGCCGACAGTGCCCAGCGGCAAACCGTGTTCGCCCGTCAATTGTGGTCACGACGGCTGGTGGCCGAGCGTGGCCTGGCCCAGCCCG TGCCGCGGCTGTTGCGCCTGCGCCAGCGCGGGCATCGGCTGGTCGGAGCGGTGGCGTTGGTGGTGGGCCTGGTCTGGTTGGGTGGCATGGTCTGGGTTTG GCACGATTCGGTGGAAGAAGCCGAAGGGCTGTCGCGGTTGATCCTCAGCACCCATAAGAATCACCTCGTGGTCGATCCTGACGAACCGCAGCTGGAACCG ACCCGGCACAACGTGCAGAACTATTGGAACATGTTGGAAAAGGCCCCGCGCTGGCGCTTTGTCTCGGTGGTCTTTCCCACTTCGTGGTTCTCTTCCGTGG ACACGCAGCTGGAGAATGGGTTGCGCCTGACTGCTCGGCACCATTGGATATTGCCTCTGCGGGACCTGCTCAATTCAGACCTGGAACAGCTCAAATCCAT CCGCAACACCGAGCGGCGGGGCAATGTGGAAAACGAAGATCCGGCGCAATGGCAGAGCTACGTGAAGGCCAAGGCGCTGGTGGACCTGGCGGTACGCCTT GAACAGCACAACCAGATGTTCAGCCAGGTGGTGAACGATCCCAAGGCACCGCTGGACGAACTGGTGCAACTGAGCAACACCGCCTTGTCCCTGGGGCTCA ACACCGGCACCTTGAGCCGGCCCCGGTTCTATAACCGGGTGCTGTTCGATGCCCAGAACAGCGATTTGAAAGGGCTGGACCTGAACGCCGCGCGCCCGGT GATCTCCGATAACTTCACCGGCCTGATGCAGCGCTGGTTGGACCATTACTTCCTGGCGGACAACTTCGTGCGCCAGGCCGGCTACCTCAAACTGCACCTG CAACGGCTGGAGGCCGGCGGCGGCAACTCCTTGAGCGAACTCGAAGACCTGATGGCGCTGATCGACGATTTGCAGACCCTGGTCAGCCTGACCAACTCGG CCTGGGGGCGGGGCAAGGGCCAGGACCTGGTCCCCGGCTACAGCCAGATGCTGGACAAGGTCAGCCACAGTACTTTGCTGGGGCCGGATATCGAGCAGGA CCTGGAGAGCCAGGCGGCGAAGTTGCAGCAGAGCTTTCGTGACCAGTGGATCGTCCAGACCGGCTCCCGGGACAATCTGCTGGTGCAACAGGGCAGTGGC CTTCTGGTCTTGCAAGACCATGTCACGGCGCTGGACGGTGCAGTGCAGGCTTTGTTCAAGCGTGATTTCGTGGCGCTGGCCATGCAGAAGGATCCGTCGG GCAACAACCCCGATTCGATGGGCCAGGGCGATGGCAGCGATGATTTCAGCGTCGCGCTGAACTACTTCGCCAGCTACAAGAGCTATGCCAATGAAGAAAT GCCGCGCATTCCGCCGGATTACCGTGACGCGCTGATGCAGGCCGCTGAAGGTGCCGCGGCCCGGGCCATGTGGTTGAGCCTGGATGAAAGCGACGAGGCG TTGCCCGGCATGGGCTTCAATGTGCAAACGACCCAGGCCGTTGCGCTGCAAAAGGCCTTTATGGACGTGCACCGTGGCGACCTGGCGATCCGTTTCCAAC GTCTGCTCAATCGCCGGGCATTGGCGCAGCTCAAGAGTGGCCTGGACGAAATCGATGCCCAGCCGCTGTTCAGCCAGCGGGCCGATGTCCAGCGTTGGGA TGGCTCGAAAAACTTCGGCTTGCAACTCTACGGTGCCAGCGATCCACAAGACCTGAAGCTGAACCTGGCCCAGCAATTCGGCGCGATGCTGCAGATCGCC GAGCAGCGAATGCCCGCGCTGGAATGGTTGATTGTCCAGCAGGACAACCTGTCGGCCCTGGAGCACGACCAGGTGGCACGCTTCATGGCCCTCAACGATG AATTGCTCAAGTACAAGAACCAGAACCCGGCCAGCTCGGCGGCTCAGCTGGAACAATTGGTGAGTCGGGACTTTATCGCCATGGACACCACCTCCTGCGC GCAGATCTTGCAGACCTCCAGCCTGCCCGGTGGTCGCGGTGACCTGGCCCTGCGCACGGTCGCGTTGCAGCAGGGCGCCCTGCAACGGTGCCTGTACCTG CAACAGAGCCAGGCGGCGACGGCCTGGAATGACGTGGCCAACTATTTCAATCAATACCTGGCCGGGCGCTTTCCGTTTTCTCAGGATGTGCGGGCCAGCG ATGCCGACCCGGCGCGGGTCCAGCGTTTGCTGGAACTGATTGACACACGCCTGCCCCTGGCCCAGGCCGGACTGACGCTGAGCCAGACGCCGGAGCGGCT GGCGGCCGAGGATTTCCTCAACCGTTTGAAACAGGCCGGTACTTGGCTCGGGCCGCTGTTCGTGCGGGACAAGAGTGGCATTCTTGGGGTGGAAATGGAC GTGCGCTGGCGTACCGATCGCGATGAGGAGCGCGGCGCCGACCAGGTGATCGCCTGGAGCCTGGACGCCGGCAACCAACAGATCAGCTACCCCGGCGGCG GCCAGCAGAACCTGCGCTGGATGGTCGGCCAGCCCGTACGCCTGACCTTGCGCTGGGCCCGTAACGGTTATCAGCGTCCGGCCAACGACCCGCTGCAACC GAACCTGGTGGTGCGCGACCTGGAGGCCGGTTGGGAGTACCAGGGGCCCTGGTCGTTGCTGCGCCTGATGCGCTCGCTGGTGTCGGTCCAGCGCCAGCCA AATGTCGACTACACCGATTTTCCCCTGGCCCTGCAACTGCCGGTGACCGCCCAGACCCAGGCCAGCACGGCGCAGCAAACGTTGATGTTCATGCGCCTGT CGTTGATGAGCCAGGGCTCCAAGCTGCCTTTGTCGATCCCACCGCTGCCGACGCGGGCGCCCCGTTCACCTTTCATGGCGACCGCATCGAGCCCCGCCAT CGCCACCCGTGAGGAGGGCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTGCCGATATCGCCTTTGCCTGAGCTGGTCAGCCAGTTGCTCGAGCCGATCAGCGCCGAATCGCCCTGTGGCCCGGACCTGCGCTACGAACCGGAATA CGACCAGTTGCGCGAATTGCGCCGGGAAGACGACACCAGCCTGCCCACCGGCGTGTGGCAGTCTTCGATCAAGCGCGCCCTGTGGCCAGACCTGGAACGG CTTGCGACCACGTTGCTGCTTGAGCGCAGCAAGGACCTGATGATCAGCGCCTGGCTGGGGGAGGCCTGGCTGCATATGGCCGGGCTGGAGGGGTTGCCGG GTAGCCTGGCGCTGGTGGCGGGGCTGTGTGAGCGCTATCCGGAGCAGTTGCACCCCCAGGCCGAGGACGGCGACCAGTCGTGGCGGGTGATCCCGCTGGA GTGGCTGGCCCGGCGCTACAGCGAAGTGCTGCTGACGCGGGTGCCGTTGTTCGACGGCCGGGAGCAGGCCTTCGCCGCTTTCTCCCTGGACGACTGGCAA
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| Amino Acid Sequence |
>type VI secretion system protein ImpL
MSTLSIVALVVLAIVVVLLIAALIWWLRTQGGAAIRSFYGAVRRMEQEQGTRDRYQMPWLMMLGNESDGAQLCAQWRLQPTDKAAWFGRWFSDAEGSVLV VPQALFLPDEGMNRQRGNWWRLLGLMLRLRSKRPLDAVIWTVPFSTLDDIEHTTELSLKVRRCFIDLLQRFGLSLPVYVVITGMEELPGVQELVSALPAE ARESMLGWSSPYLPDAAWQSQWSDQALDQVNAALSQSIIEIGALSGQLGSNLYGLPERFEGLRRALQILLEPVFQGNAQGEAPRCRGVYFTASQAPAVSG DGLTAADSAQRQTVFARQLWSRRLVAERGLAQPVPRLLRLRQRGHRLVGAVALVVGLVWLGGMVWVWHDSVEEAEGLSRLILSTHKNHLVVDPDEPQLEP TRHNVQNYWNMLEKAPRWRFVSVVFPTSWFSSVDTQLENGLRLTARHHWILPLRDLLNSDLEQLKSIRNTERRGNVENEDPAQWQSYVKAKALVDLAVRL EQHNQMFSQVVNDPKAPLDELVQLSNTALSLGLNTGTLSRPRFYNRVLFDAQNSDLKGLDLNAARPVISDNFTGLMQRWLDHYFLADNFVRQAGYLKLHL QRLEAGGGNSLSELEDLMALIDDLQTLVSLTNSAWGRGKGQDLVPGYSQMLDKVSHSTLLGPDIEQDLESQAAKLQQSFRDQWIVQTGSRDNLLVQQGSG LLVLQDHVTALDGAVQALFKRDFVALAMQKDPSGNNPDSMGQGDGSDDFSVALNYFASYKSYANEEMPRIPPDYRDALMQAAEGAAARAMWLSLDESDEA LPGMGFNVQTTQAVALQKAFMDVHRGDLAIRFQRLLNRRALAQLKSGLDEIDAQPLFSQRADVQRWDGSKNFGLQLYGASDPQDLKLNLAQQFGAMLQIA EQRMPALEWLIVQQDNLSALEHDQVARFMALNDELLKYKNQNPASSAAQLEQLVSRDFIAMDTTSCAQILQTSSLPGGRGDLALRTVALQQGALQRCLYL QQSQAATAWNDVANYFNQYLAGRFPFSQDVRASDADPARVQRLLELIDTRLPLAQAGLTLSQTPERLAAEDFLNRLKQAGTWLGPLFVRDKSGILGVEMD VRWRTDRDEERGADQVIAWSLDAGNQQISYPGGGQQNLRWMVGQPVRLTLRWARNGYQRPANDPLQPNLVVRDLEAGWEYQGPWSLLRLMRSLVSVQRQP NVDYTDFPLALQLPVTAQTQASTAQQTLMFMRLSLMSQGSKLPLSIPPLPTRAPRSPFMATASSPAIATREEGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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