Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0116250
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_40.41_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGATGCAGGCGGACCTGGCCAAGGTCGGGATCAAGGTCGACATCCGCGTGATGGAATGGGGCGAAATGCTCAAGCGCGCAAAAAACGGCGAGCACGACA TGGTGTCCGCCGGATGGGCGGGCGACAACGGCGACCCGGATAACTTCCTGACGCCTATGCTCAGTTGCGAGGCCGCCAAGAACGGCGAAAACTACGCGCG CTGGTGCAACGAGAAGTTCCAGGCGCTGATCGACCAGGCTCGCGCCACAGTGAACCCCGAGGAACGCGCCAAGCTCTATGAACAGGCCCAGGTGATTTTC AACCAGGACCAACCGTGGATCAGCATGGCCCACACCCGCATGTTCACAGCAATGCGCAACAACGTAGAGGGCTACGTGATTAGCCCGCTCACCACCAACA ACTTCGCCACCACCCAGGTGAAGTAGATAAGAAAACGCCCGGTACCCCTTATCCGAGGGCTACCGGGCACGCCTAACCGGCTGATGAGGTACACCTGAAG
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| DNA Sequence for Gene |
>PSBVI21_RS0116250
ATGTTTAGTTTTATTGCCCGCCGACTGGGATTATTGATCCCCACGTTCTTCGGCATCACCTTGCTGACCTTCGCGTTGATTCGCATGATCCCCGGCGACC CCGTGGAAGTGATGATGGGCGAACGTCGGGTCGATCCCGAAATGCATGCACAGGCAATGGAACGCCTTGGCCTCAACAAACCGCTGTATGCCCAGTACCT GGACTACATCGGCAAACTGGCCCACGGCGACCTCGGCGAATCGCTGCGTACCCGTGAAAGCGTATGGACCGAGTTCAGCTCCCTGTTTCCCGCGACCCTG GAATTGTCCATGGCCGCGCTGTTGTTCGCCGGTATCCTGGGCCTGCTGGCCGGGGTGATCGCGGCACTCAAGCGAGGATCCCTGTTCGACCATGGGGTGA TGGGCATCTCCCTGGCGGGGTATTCGATGCCAATCTTCTGGTGGGGCCTGATCCTGATCATGTTCTTCTCGGTATCCCTGGGCTGGACGCCGGTGTCGGG GCGGATCGACCTGCTCTACGACATCGAGCCGAGAACCGGCTTCATGCTGATCGACACGCTGCTGGCCGATGAGCCCGGCGCGTTTCTCGATGCGCTGCAC CACCTGATCCTGCCGGCCATCGTGCTGGGCACCATTCCACTGGCGGTGATCGCCCGCATGACCCGTTCTTCGATGCTCGAAGTGCTGCGCGAGGACTACA TCCGCACCGCCCGCGCCAAAGGCCTGTCGCCTTCGCGCGTGGTGTTCGTGCATGGCCTGCGCAACGCGCTGATCCCGGTACTGACCGTGGTCGGCCTGCA AGTCGGCACACTGCTGGCCGGTGCGGTCCTGACCGAAACGATCTTCTCCTGGCCGGGCATCGGCAAGTGGCTGATCGAAGCCATCGGCGCCCGGGACTAT CCCGTGGTGCAGAACGGCATCCTGTTAATCGCCTGCCTGGTGATTCTGGTCAACTTCGTCGTGGACATCCTCTACGGCTTTGCCAACCCACGCATCCGTC ACCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCAAAACCATGAGTACTCCAACTACCGCGGTAGCAGTCGATCAAAGCCTGCTGTATCCGTCCCCGTACAAAGAATTCTGGCACGCGTTTTCCCGCAAC AAGGGCGCCGTGGCCGGGCTGCTGTTCATGATCCTGGTGGTGTTCTGCGCGATCTTCGCCCCCTGGGTCGCACCTCACGACCCGAGCGAGCAGTACCGCG ACTTCCTGCTGACGCCGCCGGCCTGGCTTGAAGGCGGGCAGATCCAGTTCCTGTTAGGCACCGACGAACTGGGCCGCGACTTGCTCTCGCGCCTGATCCA GGGTTCGCGCCTGTCGCTGCTGATCGGCTTGTCGTCGGTGGTGATGTCGCTGATCCCGGGCATCCTGCTGGGGCTGTTCGCCGGGTTCTTCCCGCGCCTG CTCGGCCCGACCATCATGCGTTTGATGGACATCATGCTGGCCCTGCCTTCGCTGCTGCTGGCCGTGGCGATCGTCGCCATCCTCGGCCCAGGCCTGATCA
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYLDYIGKLAHGDLGESLRTRESVWTEFSSLFPATL ELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTGFMLIDTLLADEPGAFLDALH HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAKGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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