Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0115065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_31.32_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGCCAGGCGTTGCTGGGGTTCGACTGGCCGGGCAACGTGCGGCAATTGCGCAACGTGCTGCGGACCCTTGCCGCGCTGTGCGACGGCGGGCGGATCG GGCTGGAGGACTTGCCGGCGATGATCCGCCAGCGTCCGTCGATTGCGCTGGTTGAAACGGTGGCGGAGCGGCCGCTGGAGGATGCCGAACGGTTGGCATT GCTCGATGCGCTGGAGCGCCAGCGCTGGCACATGACCCACACTGCCGAGCAACTGGGGATCAGCCGCAATACCCTCTACCGCAAGCTGCGCAAGCACGCG ATTGCCCGATAACCGCGTGACGATCGTTCCCACGCTCCGCGTGGGAATGCCTCTGCGGACGCTCCGCGTTCGGCTTCCAGGGACGCAGAGCGTCCCGGGC TGCATTCCCTCGCGGAGCGTGGGAACGATCAGATTCGAAACACAAGGTGCGATTTCCCCCTCCCTAGGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
|
|
| DNA Sequence for Gene |
>PSBVI21_RS0115065
ATGCACATCCATATTCTCGGTATTTGCGGCACTTTCATGGGTTCGATGGCCGTCCTGGCCAAGGAGCTGGGCCATCACGTGACCGGCTCCGACGCCAACG TCTACCCGCCGATGAGCACTCAGCTGGAGGCCCAGGGCATCGAACTGACCCAAGGCTACGACCCGGCGCAACTGGACCCGGCGCCGGACCTGGTGGTCAT CGGCAACGCCATGTCCCGTGGCAACCCGGCGGTGGAGTACGTGCTCAACAAAGGCCTGCCGTACGTGTCCGGGCCGCAGTGGTTGGCCGATCACGTGCTG CAGGGCCGTTGGGTCCTGGCTGTGGCCGGCACCCACGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCT TTTTGATCGGTGGCGTGCCGCAGAATTTCTCGGTGTCGGCGCGCCTGGGTGGCACGCCGTTCTTCGTGATCGAGGCTGACGAATACGACAGCGCGTTTTT CGACAAGCGCTCGAAATTCGTCCACTACCGTCCCCGTACCGCGATCCTCAACAACCTTGAGTTCGATCATGCGGACATCTTCCCCGATCTGCCGGCCATC GAGCGGCAGTTCCACCATTTGGTGCGCACCATCCCGAGTGAAGGCCTGGTGATTCACCCGACCACCGAACCGGCCTTGCAGCGCGTGATCGAGATGGGCT GCTGGACTCCGGTGCAAACCACCGGCGCGGGTGGGCAGTGGCAGGTGAAGTTGCTCAAGGATGACGGTTCGCAATTCGAAGTCATGTTCGAAGGCGTGTC CCAAGGCGTGGTCGAGTGGGACATGACCGGCCAGCACAACGTTGCCAATGCCCTGGCGACCCTGGCGGCGGCTCGGCATGTCGGCGTAGTGCCATCCATG GGCATTGCCGCGTTGAGCGCGTTCAAGAGCGTGAAGCGGCGGATGGAGAAGGTCGCCGAAGTGCGCGGCATCACCATCTATGACGACTTCGCCCACCACC CGACCGCCATCGCCACCACCCTCGACGGGTTGCGCAAGCGCATCGGCGATGCGCCGCTGATTGCGATCATCGAGCCGCGTTCCAACTCCATGAAGCTCGG CGCGCACCGTGACGGCCTGCCGGAAAGCGTGGTCGATGCCGACCAGGTGATCTGGTACGCACCGGCCAACCTCGGCTGGGACCTCGGTGCCACTGCGGCG CTGTGCACGGTGCCGTCGATTGTCAGCGATTCCCTGGAAGGCATCATCGAGCGCGTGAAGAGCCAGGCCCAGCCCGGCACTCACGTGGTGATCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAACTGGCCGAGGCGCTGAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAATGGTCCGGAACGCATCACGCTGGCGATGACCGGTGCGTCCGGCGCCCAGTACGGCTTGCGCCTGCTCGATTGCCTGGTGCGCGAAGACCGCGAGGT GCATTTCCTCATCTCCAAGGCCGCGCAGTTGGTGATGGCCACTGAGACCGATGTGACCCTGCCGGCCAAGACCCAGATGATGCAGGCCTTCCTCACTGAA TACACCGGTGCGGCGGCGGGGCAGATTCGCGTGTATGGCAAGGAAGACTGGATGTCGCCGGTGGCCTCGGGCTCCGGCGCGCCGGCGGCCATGGTGGTGG TGCCGTGTTCCACCGGGACGCTCTCGGCGATTGCCACCGGGGCCTGCAACAACCTGATCGAACGGGCGGCGGACGTCACGCTCAAGGAGCGCCGCCAGTT GATCCTCGTGCCGCGGGAAGCGCCGTATTCGAGCATTCACCTGGAGCACATGCTCAAGCTGTCGAACATGGGCGTGAGCATCCTGCCGGCCTCGCCGGGT
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGQWQVKLLKDDGSQFEVMFEGVSQGVVEWDMTGQHNVANALATLAAARHVGVVPSM GIAALSAFKSVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPESVVDADQVIWYAPANLGWDLGATAA LCTVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|