Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0114990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_31.32_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGACCAGCAATAAGGGACCGCTGTGCGACTGCGCCTGATCGCCGTCGGTTCTCGCATGCCCAAGTGGGTGGAAGAAGGCTGGCATGAATATGCCAAGCG TCTTCCGTCCGAGCTGGCCCTGGAACTGGTGGAAATTCCGCTCAACACCCGTGGCAAGAACGCCGACGTGGCGCGCTTCATCCGCCAGGAAGGCGAAGCC ATGCTGGCCAAGGTCGGGCCGAACGAGCGCATTGTCACCCTCGAAGTCCATGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTGGAACTCGACCGCTGGC GGCTGGATTCGCGTACGGTCAATTTCATGGTCGGTGGCCCGGAAGGGCTGGCGCCGGAAGTCTGTGCCCGGGCCGATCAGCGCTGGTCATTGTCGCCGTT GACGTTGCCACACCCGCTGGTGCGGATCCTGATCGGCGAACAGCTGTATCGTGCCTGGACAGTTCTGTCCGGGCACCCTTACCACAAGTAATCCTGCCCC
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| DNA Sequence for Gene |
>PSBVI21_RS0114990
ATGCCCCAGCCGATCCGTATCAAGGACCACGAAAAAGACGCCCGCCTGGTGCGGGGCCGCGTCGTGTTCGGCGCTATTACGGTGGTGACGCTGATCGGCG TGCTGATTGCGCGCTTGTATTTCCTCCAGGTGATCCAGTACGAGTACCACTCGACCCTGTCGGAAAACAACCGGGTGCATGTGCAGCCGATTCCGCCGAC CCGCGGGTTGATCTTTGACCGCAATGGCGTGGTGGTGGCGGATAACCGGCCCAGCTTCAGCCTGAGCATGACCCGCGAGCGCTCCGGCGACTGGCAGCAC GTGCTCGACGTGATCGTCGAAGTGCTGCAACTGACGCCCGAGGACCGGGCGATCTTCGAGAAGCGCATGCGCCAGGGCCGACGTCCGTTCGAGCCGGTGC CGATCCTGTTCGAGCTGACCGAAGAGCAGATCGCCCTGATCGCCGTGAACCAGTTCCGCCTGCCCGGCGTCGAGGTGGTGGCGCAGTTGGTGCGTCATTA TCCCCAGGGGCCGCACTTTGCCCACTCGGTCGGCTACATGGGGCGGATCAACGAGAAAGAGCTCAAGACCCTCGATCCGGTCAATTACAGCGGCACCCAC CATATCGGCAAGACCGGCATCGAGCGTTTCTACGAGCCGGAGCTGCATGGCCAGGTGGGTTACGAGGAAGTCGAAACCAATGCTCGCGGCCGCGTATTGC GGGTGCTCAAGCGCACCGACCCGATTCCCGGCAAGGACATCGTCCTGAGCCTGGACATCAAGCTGCAAGAGGCCGCCGAAGCGGCGCTGGGCGGTCGCCG TGGCGCCGTGGTGGCGCTGGACCCGAACACCGGCGAGGTGCTGGCGATGGTCAGCCAGCCGAGTTTCGACCCGAACCTGTTCGTCACCGGTATCAGCTTC AAGGCCTACGCCGAGTTGCGCGATTCCATCGATCGGCCGCTGTTCAACCGTGTGCTGCGCGGCCTCTATCCGCCGGGGTCGACCATCAAGCCTGCCGTGG CGATTGCCGGGCTGGACTCTGGCGTGGTGACCGCGTCGAGCCGGGTCTATGACCCCGGCTATTACATGCTGCCCAACTACGACCACAAGTACCGCAACTG GAACCGCACCGGCGACGGTTATGTGGACCTGGAAACGGCCATCATGCGTTCCAACGACACCTACTTCTATGACCTGGCCCACAAGCTGGGGATCGATCGG TTGTCGTCCTACCTGGGCAAGTTCGGCATCGGTCAGAAGGTCTCCCTGGACATGTTCGAAGAGTCACCTGGCTTGATGCCGTCCCGGGAATGGAAGCGCG CGACCCGGCGCCAGGCCTGGTTCCCCGGCGAAACCCTGATCCTGGGGATCGGCCAGGGCTACATGCAGGCCACGCCCCTGCAGCTGGCCCAGGCCACGGC GCTGGTGGCGAGCAAGGGCAAGTGGTATCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGAAACCGGTGGACCCGGACCCGATGCCAGACATCATCCTG CGCAATCCGTCGGACTGGCAGAAGGTCAACAACGGCATGCAGCAGGTGATGCACGGCGCCCGGGGCACCGCCCGCAAGGCGGCCATCGGCTCGCCCTACC GCATTGCCGGCAAGAGCGGTACGGCCCAGGTCGTCGCCATCAAGCAGGGCGAGAAGTACGACCGCTCCAAGGTCCAGGAACGCCATCGCGACCACGCCTT GTTCGTCGGCTTCGCGCCGGCCGACAACCCGAAGATCGTCGTATCGGTGATGGTCGAGAACGGTGAGTCGGGTTCCGGCGTCGCCGCGCCGGTGGTGCGC CAGATCATGGACGCCTGGCTGCTGGACGAGCACGGCCAGCTCAAGCCTGAATACGCAAGCCCCACCACTGCGGAGGCTACGGCCCGTGAAGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTCGACCGGATCCTCTCCAGCGAAGATGTGATGCGCCGTCGTGCCACGCTGTTGCAGCGCATGCACATCGATGGTCCGTTGCTGATCCTGCTGCTGACC CTGGCCGCAGGCAGCCTGTTCGTGCTGTATTCGGCCAGTGGCAAGAACTGGGACCTGCTGGGCAAGCAGGCCACCTCGTTCGGCATCGGCCTGGTGTCGA TGATCGTCATTGCCCAGCTCGAGCCGCGTTTCATGGCCCGCTGGGTGCCGCTGGCCTATGTGGTGGGCGTGGGCCTGCTGGTGGTGGTGGACGTGATGGG CCACAACGCCATGGGTGCCACCCGCTGGATCAACATTCCCGGGGTGGTCCGCTTCCAGCCTTCGGAGTTCCTCAAGATCATCATGCCGGCGACCATCGCC TGGTACCTGTCCAAACGCACCCTGCCGCCGCAGCTCAAGCACGTGTGCATCAGCCTGTTGCTGATCGGCATCCCGTTCATCCTGATCGTGCGCCAGCCGG
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| Amino Acid Sequence |
>penicillin-binding protein 2
MPQPIRIKDHEKDARLVRGRVVFGAITVVTLIGVLIARLYFLQVIQYEYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQH VLDVIVEVLQLTPEDRAIFEKRMRQGRRPFEPVPILFELTEEQIALIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGYMGRINEKELKTLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPNTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASSRVYDPGYYMLPNYDHKYRNWNRTGDGYVDLETAIMRSNDTYFYDLAHKLGIDR LSSYLGKFGIGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALVASKGKWYRPHLAKTIEGQKPVDPDPMPDIIL RNPSDWQKVNNGMQQVMHGARGTARKAAIGSPYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDEHGQLKPEYASPTTAEATAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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