Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0112860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_23.24_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTCTGCACCAGCGCGACGCAGGGCCACGCCGAGGTTGATCGCGCATTGGTCACTGAAGTTCTTGGCACCATTGGTTCTGCAAGGCGCGGCATCACCAA ATATCTGCGGATGGCTTTTCCACAACGTGTCGAATGTAAACATTCTGCCCTCTCCATGAGGTTTTTATCCTGGACGAATAGCCTAGCAGACCTGCTCGCA CCATGGATTCAATAAGCGCTGGCGCAAGATTGAAAGCCAGTAGCCATCACCGCTCCTTTATGGTTTTCTGCCCCAGCACGGTTATTGACTGAAACCTTTC GAAATGACCCGTTTGTGATGTTTCAGCCCGACGCAAGGAGGGCTCTAGCGCAACCTGTCGAGATGTACAGCCAAAGGACGGTTTTCCTGTTAACCGCACT CGACAAGTTGTTTTTCTGCCTAGACTCATCATTGTTCCGCCGTGCGCTGTGTTTTGAATGAGCCCGCACGAAAATACTAAAAACAAGAGGAAAGCCCGTA
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| DNA Sequence for Gene |
>PSBVI21_RS0112860
ATGTTCAAACCTATCTGGAAAGCGCTCGCTTGCACATTGGCCCTTAGTGCGATGAGCACGGCCATGGCGGCAGATCCGGTGGTGATCAAGTTCTCCCATG TGGTCGCCGAACAAACACCAAAAGGCCAAGGCGCGCTGCTGTTCAAAAAACTCGTGGAAGAACGGTTGCCAGGCAAAGTGAAGGTCGAGGTCTACCCCAA CTCTTCACTGTTCGGCGATGGCAAGGAAATGGAAGCCCTGCTATTGGGCGACGTGCAGATGATCGCGCCGTCACTGGCCAAGTTCGAGCAATACACCAAG ACCGTACAGTTGTTTGACTTGCCGTTCCTGTTCGATGACATCTCCGCCGTGGACCGTTTCCAGTTGAGCCCTGAAGGCCAGAAGCTGCTCAAATCCATGG AAAGCAAGAACATCACCGGCCTGGCTTATTGGCACAACGGCATGAAGCAGCTGTCGGCGAACAAACCCCTGCGTGAACCCAAGGATGCTCGTGGCCTGAA GTTCCGCGTACAGGCATCGGCGGTACTGGAAGAGCAATTCAAGGCGGTGAACGCCAACCCGCGCAAGATGAGTTTCGCCGAGGTTTACCAAGGTTTGCAG ACCGGCGTGGTCAACGGTGCGGAAAACCCGTACTCGAACATCTACAGCCAGAAAATGCATGAAGTGCAGAAGTACATCACCGAATCCAACCACGGTGTAC TCGACTACATGCTGATCACCAACACCAAGTTCTGGAACGGCCTGCCGCCGGACATCCGCACTGAACTGGACAAGATCCTGGTAGAAGTCACGGCCCACGT GAACAAAGAGGCCGCGCAACTGAACGAGCACGACAAACAGCGCATCCTCGACGCCAAGACCACCGAGATCATCACCCTGACGCCAGAAGAACGTGGCGAA TGGCGCGACAAGATGAAACCGGTATGGAAAAAGTTCGAAGGTGATATCGGCGCTGACCTGATCAAAGCCGCCGAAGCCTCCAACAAGGCCCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGGTTGGCCGGTGCTGCCGCCCTGGTAGCGCCGGCCTGTCGTCCCCCACAGGAGAGGTCACGCCATGAACGCCCTTCGGCGCATCTGGGAACACTTCGA GGAAGCTTTCATTGCCTTCCTTCTGGCCGCCATGACGCTTGTAACGTTCGTCTACGTGGTACTCAACAATCTCTATACCGTTTTCTATAGCCTCGGCGAC CAATGGTCAGCCGCGAGCGAGTCGATGTTCGCCATTGGTGACACCGTCATGGGCATGGCCCAGGCCATGACCTGGAGCACGTCACTGACCAAGGCCCTGT TTGGCTGGCTGATCTTTTTCGGGTTGTCGTACGGCGTGCGCACGGCCGGGCACATCGGCGTCGATGCGCTGGTGAAACTGGCGAGCAAACCGGTGCAGCG CGTCATCGGCGTCATCGCGTGCCTGTGCTGCCTTGGCTATGCCGGGCTGCTGGCGGTGGCGAGTTTCGAATGGATCAACACCTTGATGATTGCCCAGATC
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| Amino Acid Sequence |
>C4-dicarboxylate ABC transporter
MFKPIWKALACTLALSAMSTAMAADPVVIKFSHVVAEQTPKGQGALLFKKLVEERLPGKVKVEVYPNSSLFGDGKEMEALLLGDVQMIAPSLAKFEQYTK TVQLFDLPFLFDDISAVDRFQLSPEGQKLLKSMESKNITGLAYWHNGMKQLSANKPLREPKDARGLKFRVQASAVLEEQFKAVNANPRKMSFAEVYQGLQ TGVVNGAENPYSNIYSQKMHEVQKYITESNHGVLDYMLITNTKFWNGLPPDIRTELDKILVEVTAHVNKEAAQLNEHDKQRILDAKTTEIITLTPEERGE WRDKMKPVWKKFEGDIGADLIKAAEASNKAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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