Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0108260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_15.16_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGTGACAATGCAGCCATGGTCAAGCTGACCCTGGAAGACGGCAGCCAATACCCACACGAAGGCAAGCTGGAATTTTCCGAAGTGTCGGTCGACCAGAC CACCGGTTCGGTGACCTTGCGCGCCGTATTCCCCAACCCTGACCACACCCTGCTGCCGGGTATGTTCGTCCATGCACAACTGCAGGCCGGCGTGAACAGC GCGGCGATCCTCGCCCCGCAACAAGGCGTGACCCGCGACCTCAAAGGCATGCCGACTGCCCTGGTGGTGGGCCCGGACAACAAGGTCGAGCTGCGTCAGC TCAAGGCCAGTCGCACCGTCGGCAGCCAGTGGCTGATCGAAGATGGGCTCAAGGCCGGCGACCGCCTGATCACCGAAGGGTTGCAATACGTACGGCCCGG AGTGGAAGTCAAAGCCACCGAAGCCACCAATGTCGATGCCAAGAACCCGGCCCCCGCTCAGGCAGCTGATAAAGCAGCCGGCGGCAAAGGGGAGTAAACC
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| DNA Sequence for Gene |
>PSBVI21_RS0108260
ATGTCGAAATTTTTTATCGACCGTCCGATTTTCGCCTGGGTAATTGCCTTGGTGATCATGCTGGTCGGGGCTCTATCGATCCTCAAATTGCCGATCAACC AGTACCCGAGTATCGCGCCACCGGCCATTGCGATCCAGGTGACCTACCCGGGTGCGTCCGCGCAAACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA GCAACTCAACGGCATCGACAACCTGCGTTATGTGTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATCACCGCGACCTTCGAACAGGGCACCAGCTCC GATACGGCGCAGGTCCAGGTCCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAGCAGGGTATCCGCGTGACCAAGGCCGTGA AGAACTTCCTGATGGTCATCGGCGTGGTGTCGCGCGACGGCAGCATGACCAAGGACGACTTGGCCAACTACATCGTGTCCAACCTGCAAGACCCTATCTC GCGTACCGCCGGTGTCGGTGACTTCCAGGTCTTCGGTGCCCAGTACGCCATGCGCATCTGGCTCGACCCGGCCAAGCTGAACAATTTCAACCTGACTCCG GTGGACGTCAAAAACGCCATTGCCGCGCAAAACGTCCAGATCTCGTCCGGCCAACTCGGCGGCTTGCCTGCCCTGCCCGGCCAGCAACTGAACGCCACCA TCATCGGCAAGACTCGTTTGCAGACCGCCGAGCAGTTCAAGGCGATTCTGCTCAAGGTCAACCCGGACGGCTCGCAAGTGCGCGTCGGCGATGTTGCCGA AGTGGGTCTGGGTGGTGAGAACTACAGCGTCAGCGCCCAGTTCAACGGCGCCCCGGCGTCGGGCCTGGCGGTAAAACTGGCCAACGGTGCCAACGCCCTC GACACGGCCAAGGCCCTGCGCAAGACCATCGACGACCTCAAGCCGTTCTTCCCGCAAGGCGTGGAAGTGGTGTTCCCGTACGACACCACGCCGGTGGTGA GCGAATCGATCAAGGGTGTGGTTGAAACCCTGGTCGAAGCGGTCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCGACCATCAT CACCACGATGACGGTGCCGGTGGTGTTGCTGGGTACCTTCGGGATCCTCGCGGCGTTCGGCTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAACGGGTGATGAGCGAAGAAGGCCTGTCACCCAAGGAAGCCACCAAGAAAT CCATGGGCCAGATCCAGGGCGCCCTGGTAGGTATCGCCCTGGTGCTTTCGGCGGTACTGCTGCCGATGGCGTTCTTCAGTGGCTCCACGGGGGTGATCTA CAAGCAGTTCTCCATCACCATCGTCTCGGCCATGGCCTTGTCGGTCATGGTGGCCTTGATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGGCGATC CCCAAGGGTGAGCACGGCACGCCGAAACGCGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGTGGCGTGCGCAGCTACGAGCGTGGTGTGGGCAATA TGCTCAAGCACAAGGCCCCGTACCTGCTGGCCTACGTGCTCATCGTGGTTGGCATGATCTGGCTGTTCACCCGCATCCCGACTGCGTTCCTGCCCGAAGA AGACCAGGGCGTACTGTTCGCCCAGGTACAAACGCCGGCGGGCTCCAGTGCCGAGCGTACCCAGGTGGTGGTGGACAAGATGCGCGAGTTCCTGTTGCGC CCCAGCAAGGACGGCGGTGAAGGCGATGCGGTGGCCTCGGTATTTACCGTGACCGGCTTCAACTTCGCCGGTCGTGGCCAGAGCTCCGGCATGGCGTTCA TTATGCTCAAGCCATGGGAAGAGCGTAACGCCGACAACAGCGTGTTCAAACTCGCGGCCCGCGCCCAGCAGCACTTCTTCACGTTCCGTGATGCGATGGT GTTCGCCTTTGCTCCGCCAGCGGTACTGGAGCTGGGTAACGCCACTGGTTTCGACGTGTTCCTGCAGGACCGTGCCGGCATTGGCCACGATAAGTTGATG CAAGCCCGTAACCAGTTCCTGGGAATGGCATCCCAAAGCAAGATCCTGTCCCAGGTGCGTCCAAACGGCCTGAACGACGAGCCGCAATACCAACTGGAAA TCGATGACGAGAAGGCCAGCGCGCTGGGCATCACCTTGTCGGACATCAACAACACCCTGTCGATTGCCCTGGGCAGTAGCTACGTGAACGACTTCATCGA CCGTGGTCGGGTGAAGAAGGTGTATGTACAGGGTCAACCCGGCGCTCGCATGAGCCCGGAAGACCTGAAGAAATGGTACGTGCGCAACAGCGCCGGGACC ATGGTGCCGTTCACGGCATTCGCCAAGGGCGAGTGGGTCTATGGCTCGCCGAAACTGGCCCGATACAACGGCGTGGAAGCGATGGAAATACTTGGCGCCC CCGCCCCGGGTTACTCCACTGGCGAAGCCATGGCCGAAGTCGAAGCCATCGCCAAGAAGCTGCCGGCCGGGGTTGGTATTTCCTGGACGGGCCTGTCCTA CGAGGAGCGCCTGTCGGGCTCCCAGGCACCTGCGTTGTACGCCCTGTCGCTGCTGATGGTGTTCCTGTGCCTGGCGGCGCTGTATGAAAGCTGGTCGATT CCGATCGCGGTCATGCTCGTGGTGCCGCTGGGGATCATCGGTGCCCTGATGGCGACCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCAGGTGGGCT TGTTGACAACCATCGGTTTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTTGCCAAGGAACTTCATGAGCAGGGCCGCACGCTGATGGAAGCCGCGAT CGAAGCCTGCAGGATGCGTCTGCGGCCGATCATCATGACGTCCCTGGCATTCATCCTCGGGGTAGTCCCGTTGGCCATCTCCACCGGTGCCGGTTCGGGC AGCCAGCACGCCATCGGTACCGGCGTGATTGGCGGTATGCTCACCGCTACCATCCTGGCAATCTTCTGGGTGCCATTGTTCTTCGTGACGGTGTCGTCAA TGGGTCGTCGCAAACCTATCGACCAGGACGACACTCCTGAAACTTCTAAAGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTCTCCCTGACCATCGCCGCCGTCGTGCTCAGCGGTTGCTCGCTGATCCCCGACTATCAGCGGCCCGAAACACCGGTCGCGGCGCAATA CCCGCAAGGGCCGGCCTACGAGGCGGCCAATGCGCCCGGCCAGGCCGCCGCCGAGCAAGGCTGGAAGCAGTTTTTCCATGATCCGACCCTGCAACAGCTG ATCCAGGTCGCGCTGGAAAACAACCGCGACCTGCGCGTCGCGGCACTGAACATCGATGCCTATGCCGCGCAATACCGCATCCAGCGCGCGGACCTCTTCC CGGCGGTCTCGGCCACCGGCTCCGGCAGCCGCCAGCGGGTACCGGCACGGGCTTCGCAAAGCGGTGAAGCGGCCATCAGCAGCTCCTACTCGGCCACCCT GGGCATCAGCGCCTATGAACTGGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAGCAAGCGCTGCAAAGCTACTTCGCCACCGAAGAAGCCCGTCGCAGC
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| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTSS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGVVSRDGSMTKDDLANYIVSNLQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKNAIAAQNVQISSGQLGGLPALPGQQLNATIIGKTRLQTAEQFKAILLKVNPDGSQVRVGDVAEVGLGGENYSVSAQFNGAPASGLAVKLANGANAL DTAKALRKTIDDLKPFFPQGVEVVFPYDTTPVVSESIKGVVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVMVALIFTPALCATMLKAI PKGEHGTPKRGFFGWFNRNFDRGVRSYERGVGNMLKHKAPYLLAYVLIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDKMREFLLR PSKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNADNSVFKLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHDKLM QARNQFLGMASQSKILSQVRPNGLNDEPQYQLEIDDEKASALGITLSDINNTLSIALGSSYVNDFIDRGRVKKVYVQGQPGARMSPEDLKKWYVRNSAGT MVPFTAFAKGEWVYGSPKLARYNGVEAMEILGAPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI PIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGAGSG SQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGRRKPIDQDDTPETSKEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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