Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0107995
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0009103 | lipopolysaccharide biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF02706
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF02706
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 189 | 209 | - |
| PANTHER | PTHR32309 | TYROSINE-PROTEIN KINASE | - | - | 11 | 344 | 6.3E-24 |
| Pfam | PF02706 | Chain length determinant protein | IPR003856 | Polysaccharide chain length determinant N-terminal domain | 12 | 105 | 2.6E-15 |
| SUPERFAMILY | SSF160355 | Bacterial polysaccharide co-polymerase-like | - | - | 51 | 314 | 1.18E-46 |
| Coils | Coil | Coil | - | - | 340 | 349 | - |
| Gene3D | G3DSA:3.30.1890.10 | - | - | - | 43 | 315 | 2.6E-58 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.