Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0106205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_8.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGCTCGGAATTTAAAGGAAATTGTCCTACAACTGGTTGTGGGTAGGGTGGCGTAGGCGGCGACTCTCTGATCAGGCAGTCAAAAACGGGCACGCACAA AAAAGGCCACTCTTTCGAGTAGCCTTTTTTGATGTTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACT GCTCCATCCCGCGTCTGTGTGGCGGCATTCTACAGAGAATCGCGCGGCTGTCAACCCTGGCTATATAAAAAACTGTTCCGCTTCAAGTGCTTAGCCTTGG AGAAAGGCATTGTGACAGCGCTGTGACGCAAGCCTGGCAAGGGCTGAAGCTCTATTGGAGGCTTCATTGCGATTGAAGAAGTAAATTTGTGTAGGCACTT TCGGGTCTCGACGAAGGATCTTTTAAACTACTGGTGCTATATACAGGTGCCGGTGCGATACTGGTGGCCCCGATTCGTCGCACACTCTGCTGCTTTATTT
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| DNA Sequence for Gene |
>PSBVI21_RS0106205
ATGACGCAACGTAAGATCATCCATGTCGACTGTGACTGTTTCTACGCCGCCATCGAGATGCGCGATGACCCGCGGCTGGCCGGCAAACCCTTGGCGGTGG GAGGTTCGGCGGATCGGCGGGGCGTGATTGCCACCTGTAACTACGAAGCGCGGGCCTACGGAGTGCGCTCGGCCATGTCTTCCGGCCACGCCTTGAAGCT TTGCCCGGACCTCACCATCGTCAAGCCACGAATGGATGCCTATCGGGAAGCGTCGAAGGAAATTCATACGATTTTCAGCGATTACACTGACCTGATCGAG CCGCTGTCGCTGGACGAGGCCTACCTGGACGTCTCCGCCAGTGCCCATTTCGGTGGCAGCGCCACGCGCATCGCCCAGGATATTCGTCGGCGGGTTTCCA ACCAGTTGCACATCACTGTGTCCGCAGGCGTCGCGCCGAACAAGTTCCTGGCCAAGATCGCCAGTGACTGGAAAAAGCCCAACGGGTTGTTCGTCATCAC CCCCGACCAGGTCGATGACTTTGTTTCGGCCCTGCCGGTCAGCAAGCTCCACGGTGTTGGAAAGGTCACCGCCGATAAGCTGAACCGACTCGGCATCGTC GATTGCCTGCAGTTGCGCCAATGGGACAAGTTGGCGCTGGTGCGCGAATTTGGCAGTTTCGGTGAGCGGCTCTGGAGCCTGGCTCGTGGGATCGATGAGC GGCTGGTGCACAACGACAGCCGACGTCAGTCCATCAGTGTGGAAAACACCTACGATGTCGACCTGCCCGACCTGGTGAGTTGCCTCGCCAAGCTGCCGGA ACTGATGGAAACCCTCAACGGACGCATGGCGCGGATCGACAGCAGTTATCGACCGGGCAAGCCGTTCGTCAAAGTGAAATTCCACGACTTCACCCAAACC ACACTGGAACAGGCCGGGGCAGGGCGGGACCTGGGCAGCTACCAGCTGCTGTTGACCCAGGCGTTCAACCGGGGCGGCAAGCCGGTGCGGTTATTGGGGA TAGGGGTGCGGCTGGAGGATTTGCGCGGTGGGTTTGAGCAGTTGGAGTTGTTTGAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTGACGATGAGCCCCTGCTTGGCGCGGTCCTGTTGGCAAGGGAATCCTGTGGGAGCAAAGCTTGCTCGCGATGGCATCCTTGAGGCCGCCATCGCGGG CAAGCCTTGCTCCCACAGGTCTTGCCCTCACAAAACCCCTTGCCACAGGGGGATTTCAGTTAACGCCAGGATCCGCCACCAACCGCCCGCCATCCTTGGT CAGTGCTTTCATGAATTCGGCCTGCAACTCCGGATCATTGCGGGTCAGTTCGATCAGGCTCTGCTCCAGTTCGCTGGCCTCTTCTTCAAGTCCCAGCTCC GACAGGCGCTTGACTCGATGTACCCATTGGCTCACCTCGTCATCTTCCAGGTCGTCGTAGATCAACGCGTGGGCTTCCAGCAGCTTGCTGCGCAAGGTGC TGCTGATGCTCAGGGATGAGTCGGTGTGCACTTCGTCCTGGGCATCCGTCACGCTGATCTGCAATTTGCCGAACTGGCTCAGGTCCTGCTCGGCGAACGG
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| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHVDCDCFYAAIEMRDDPRLAGKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSGHALKLCPDLTIVKPRMDAYREASKEIHTIFSDYTDLIE PLSLDEAYLDVSASAHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVDDFVSALPVSKLHGVGKVTADKLNRLGIV DCLQLRQWDKLALVREFGSFGERLWSLARGIDERLVHNDSRRQSISVENTYDVDLPDLVSCLAKLPELMETLNGRMARIDSSYRPGKPFVKVKFHDFTQT TLEQAGAGRDLGSYQLLLTQAFNRGGKPVRLLGIGVRLEDLRGGFEQLELFER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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