Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0105510
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_7.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCACCATCACTCGTGGCGAGGTCTGCCTGCACTTGGGCGAGGGCGATTGCCGGGTGGCGGTGGTCAGCGGCTCGGCACAACTGCAACCCCTGCGCGAG CCATTGCTGAGCTTGGAAGCGGGCCAGCAGGTCAACATCCAGGATTCAGGCGCGGGGCCAGTGAAGGCGTTCGACGTGGCGCAGCTGGGTTGGCGTGACG GCGTATTGGTTGCGCAGGACCAGCCGCTGGGGCATTTCCTGCGGGAACTGAGCCGCTATCGCCCCGGGGTGTTGCGTTGGGACGAAACCCTGGAAGCCCT GCGAATCACTGGCAGTTTCCGCTTGGACAACACCGACCGAATCCTCACGCTGCTTGCGGCCAGCCTACCGCTGGACGTGCACATGCGCACTCGCTACTGG GTCACGTTGACGCTTCGCAAAAATATGGCCTGATGCCTGTCCCCTTTTTTTGTCTCGCTTGTCATTCAAGGCAACTGAACAAAAATGAGAGCGCTTTCCA
|
|
| DNA Sequence for Gene |
>PSBVI21_RS0105510
ATGTCCGCAGTTGCACCTTTGCGTTTGCGCCCGGCCTTTGCCGGCTGGCGTCCGCTGTTGAACCTGAGCCTCATGCTGAGCTTGAGCGCCAGCCCATTCT TTATCTCATCGAGCCTGGCCGAAGAAACCGACCGGCGCAGCTATCAGGTGCCGGCCGGCAGCCTCGGCGCAGCGTTGGCCCGGTTTGCCGGGCTGGCGGG CGTCAACCTGTCGGTGGATCCGGCCCTGGTAAGTGGTCGCAACAGCGCCGGGCTTTCGGGTGAGTTTGGCGTAGAGGAGGGGTTTGCCCGGCTGTTGTCG GGTTCGGGCCTGCAATTGCAAGCGGTGGGTGAGCAGGCCTATATCCTGACGCCGGCACCGGAAGGCGGCAGCCTGCAACTGGCACCCACCTCGATTCTAG GCGCCACGACGTCGACGGACAGCCCGGCGTATGCCGGTGGCCAGGTTGCTCGCCGTGGTTCGCAAGGCTTGCTGGGCTCGCGGGATTTCATGGAAACACC GTTCAGCATGACCACCTACACCAGCGCGGCGGTCAAGAACCAGCAGGCGCGCACCTTGGGCGACATGATCGCCAGCGACCCCTCGGTCCGCGCCACCAAC CCGGCGGGCGGACGCTTTGAGCAGTTCACCATTCGTGGTTTCAGCCTGTTCAACAGCGATGTTGCGTACAGCGGTCTCTACGGCATCCTGCCAACCTACA CGATCGACATGGAAATGGCCGAACGCGTCGATATCCTCAAGGGCCCGAGCCAGCTCATCAACGGTATCTCGCCGCGGGGCAGCGTGGGCGGCGGGATCAA TGTGGTGCCCAAGCGTGCCACCGACAAGCCCATCACCTCGTTCACCGGCAGCTATGCCTCCAACAACCAACTGGGCGGTGCTGTGGATGTCGGTCGGCGC TTTGGCGAAGATGACAAGTTCGGGATTCGCTTCAATGGCGTGAAGCAGGCGGGCGACACCGAATGGGATCAACAGAGCGTGGACCGCGAGATGGCGGTGC TGGGCCTGGATTTTCGCGGTGAGCGCCTGCGACTCTCGACGGACATCGGCCACACCGAACGTAACACCGACGCGCCCCAGGAACGCGTGCAGGTGGGCGC CAATGCACAGGTTCCTCACGCCAGTGATGTGCGCGACAACTACGCCCAGTCCTGGAGCAAGGCGCGCACCAAGGACACCTTCGGCACCGTGAACGCTGAA TTCGACGTCAACGATTCCGTCATGCTGTATGGCGGTGTCGGAGCGCGTAAAAGCGAGCACGACTTCCTTCGGCACAACGTTTCGGTCACCAACGACGCGG GTGACTTCACCGTCCAGCCCCGAGACTTTACCCGCGACGAAAATGTCCGCACGGCCACAGCCGGGGTGCGCAACTGGTTCCATACCGGCCCGGTGAGCCA TGAGGTCAACCTGGCTGCCAGCTATTTCTACATGGACTTCGAAAATGGCGGCGCCCGTTACGCCAACGGTCGCAGCAACCTGTATGAACCGGTGCAGACC CCGGCGCCGAGCAACCCGACGCGACAGGACGATAAGGTCTACACCGAGAACCGCTTCAGTGGCGTGGCGTTGTCCGACACCCTGGGGCTGTTCGACGATC GCTTGCTGCTGACCCTCGGCGCTCGCTGGCAACGGGTGAAGGTTGACGACTGGACGAATAACGTCAAGGGCGACACTGCCTACGATGAGGAAAAGGTTTC ACCGTCGGGCGGCATCCTGTTCAAGGCGACGGACAAGTTGTCGCTGTATGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCGACGTCG GTGAACGAGGATGAGATTTTCCCGCCGTTCATCAGCCGTCAGGTCGAGGTGGGCGCCAAGTATGATGCCGGCCCATTCGCCGTCACCGCCGCGCTGTTCC GGATCAAGCAGCCGGCCTATGCGACCGACGCCACGACGCGTGTCTTCGGCCCGAACGGCAAGCGAGAAAACACCGGCGTGGAGTTGAGTGTGTTTGGCGA ACCGCTGAAGGGAACCCGTTTGCTCGGCGGCGTGATGTACATCGACAGCGAACTGACCCATACCACCAATGGCACCTTCGATGGCAACCGCGCCCCCGCC ACGCCGAAGTACAACGTCAACCTCGGTGCCGAATGGGACGTGCCGACGGTACAGGGCCTGACCCTGACCAGCCGGGGCATCTACTCCAGCTCGCAGTACC TGGACCAGTCCAACACCAAGGAAATCGATTCCTGGGAACGCTTCGACGTCGGCGCCCGCTACGCATTCAAGGTCGACGAGAAGAACGTCACCCTGCGGGC CAACATCGAAAACGTGGCAGACAAGCGCTACTGGAGTTCGGCCGGGGCGTCGGATGACAGTGAGGCCGGATTGACGTTGTCGACCCCGCGCACCTACCTG ATTTCCGCAACGGTGGATTTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCAGGTGCCGCTCCAGGGAAGGAGCCGCCTGGGTTCAGATGTCGCGAAACAGATCGTGAGCATCCAGCAGTCGCCAGGCAATTTCGGGGCGTTTTTCC AGCCCACGGCGGATGGCGGCGGGAATCGACTGGCGAATCTTGCGGCACAGGCCGGGCTGGTCCTGGAATTCGATGGCGATGCCGCGCATGGTCCGCACTT CGTTATAGCCAGGCTCGACGCTCAGGCGGATCCCCAGGTTTTCGTACAGGCGTTGCTGCAGGCGCTGGAGTTCGTCGAGGCTCTGGATGTTCTCCAGGCG TTCAAGCAGGCGTTTTTCTTCCTGGCGATTCAAGCAAAGGATGCGCAGGTCGCTGCCAGGCGCTTGCAGCAAGGCATCACGGCCGCAATCGCAGACGCCG GGCGGGCAGGGGGGACGGATCGGAATCGACGCGGTCATGGGCTCCACAAAAATCTGCTGCACAACGAAACAGCGAGCTTATCGCCGGCCCAGGCAATGTG
|
|
| Amino Acid Sequence |
>TonB-dependent receptor
MSAVAPLRLRPAFAGWRPLLNLSLMLSLSASPFFISSSLAEETDRRSYQVPAGSLGAALARFAGLAGVNLSVDPALVSGRNSAGLSGEFGVEEGFARLLS GSGLQLQAVGEQAYILTPAPEGGSLQLAPTSILGATTSTDSPAYAGGQVARRGSQGLLGSRDFMETPFSMTTYTSAAVKNQQARTLGDMIASDPSVRATN PAGGRFEQFTIRGFSLFNSDVAYSGLYGILPTYTIDMEMAERVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITSFTGSYASNNQLGGAVDVGRR FGEDDKFGIRFNGVKQAGDTEWDQQSVDREMAVLGLDFRGERLRLSTDIGHTERNTDAPQERVQVGANAQVPHASDVRDNYAQSWSKARTKDTFGTVNAE FDVNDSVMLYGGVGARKSEHDFLRHNVSVTNDAGDFTVQPRDFTRDENVRTATAGVRNWFHTGPVSHEVNLAASYFYMDFENGGARYANGRSNLYEPVQT PAPSNPTRQDDKVYTENRFSGVALSDTLGLFDDRLLLTLGARWQRVKVDDWTNNVKGDTAYDEEKVSPSGGILFKATDKLSLYANYMEGLSQGKIAPSTS VNEDEIFPPFISRQVEVGAKYDAGPFAVTAALFRIKQPAYATDATTRVFGPNGKRENTGVELSVFGEPLKGTRLLGGVMYIDSELTHTTNGTFDGNRAPA TPKYNVNLGAEWDVPTVQGLTLTSRGIYSSSQYLDQSNTKEIDSWERFDVGARYAFKVDEKNVTLRANIENVADKRYWSSAGASDDSEAGLTLSTPRTYL ISATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|