Pseudomonas brassicacearum 51MFCVI2.1, PSBVI21_RS0102740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum 51MFCVI2.1 PsbVI21DRAFT_scaffold_5.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCAGCCGCGCGCCGAGCTGTTGCTGGGCAAGCTTTACTACGAAGGCAAGTGGGTCCCGGCCGATGCCAAGGTCGCCGAGGCGCATTTCCAGAAAGCCG TGGGCCGCGAAGTGGCTGCCGACTACTACCTCGGCCAGATCTATCGCCGCGGTTACCTGGGCCAGGTGTACTCGCAAAAAGCCCTGGACCACCTGCTCAA GGCCGCCCGCAACGGCCAGAACAGCGCCGACTTTGCCATTGCCCAGCTGTTCTCCCAGGGCAAGGGCACCAAGCCCAACCCGGTCAACGCCTATGTGTTC AGTCAGTTGGCCAAGGTGCAGAACACCCCGCAAGCCACCGAGCTTGCCCAAACCCTCGAAGCACAATTACCGCCGGAACAACTTGCACAAGCCCAACGCC TGCTACAACAAGAGCAGGCCATTCGCGGCGCTATGAGCCCCGATACGCTTGAACTGCAAGCCCTAAAAGAAGATGACGGCGAGGAACCTCTATGAAGCTT
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| DNA Sequence for Gene |
>PSBVI21_RS0102740
TTGAAGCTCAACCCTTTTGTGCAGGCTGGTATTGGCCTGTCGTTTGCCCTGCTGTGGTCCTGTCCGACCCTGGCGGCACTGACCGATAGCAAGAATTTCG GCCTGGAAGTGAAGATCACCGGACAGTCCGAAGATGACCGTGACCTCGGCACCCAGAGCGGTGGCGACGTCAACGGTGTCGGCCTGGACCTGCGTCCATG GGTCTACGGTGAAAGCGAAAGCGGCGCCTGGAGCGCCTATGCCATGGCCCAGGCCGTGACGTCCAGCGACATCATCGAGACCGACACCCTGCAGCAGTCC GATGGCAGCACCCAGCAAACCGACAGCGGTGACCGCGAAGCCAAGAAAAGCTACCTGGCCATGCGCGAGTTCTGGATTGGCTACCGCGGCCTGACCCCCT ACCCGGGCGAGCAGTTGAAATTCGGTCGCCAGCGCCTGCGCAACGACGACGGCCAATGGCGCGACACCAACATCGAAGCCTTGAACTGGACCTTCGATAC CACCTTGCTGCGGGCCAACCTCGGCGTGGCCGAACGGTTCAGCGAGTACCGTACCGACCTCAAGGAATTGTCCCCCAAGGACAAGGACCGCCTGCACGTC TATGGCGACGTGGGCTACCAGTGGATGCCAGGCCAGTGGGCCGGTATCCGCGCCCACCACTCCCATGACAATGGCAGCCTCGATTACCCGACCCCGGGCG AAGCCACCGACACCCTGGACAAGACCCAGAACGGCGACATCTCCTGGCTGGGCCTGGAAGCCAACAGCGATGCCTACAACTGGCGCAACACCAACACCGT CAACTACTGGGCCAGTATCACCGGCATGAGCGGCGAGCGCGACACCGTCAACCCGCTCAACGCCGACGGCACGCGCCCGACAGAAGCCAAGCACAGCGAT GACGTGGACGGCTGGGCCACTGACCTGGGTATCCGCCTGCGTCTGGACCCGCAATGGCAAGTCGGTGCGGCCTATGCCCGCGCCAGCGATGAGTACCAAC AGAACGGCCTGCAAAGCAACCGCTCGAACTTCACCGGCACCCGCTCGCGCGTGCACCGTTTCGGCGAAGCGTTCCGTGGCGAAATGGCCAACACCCAGAG CGCCAGCCTGTTCGGCTCCTGGCAACTGCGTGACGAATACGACGCCAGCCTTGTGTACCACAAGTTCTGGCGCGTGGACGGCAACAAGCCAGTGGGCAGC AACGGTATCAACGCCGTGGAAAACAACACCGACGACGTGACCGGCGCGATTCTGTCCACCTCGTCCCTGCCGCTGAATGACGGCGAAAAGGACCTGGGCC AGGAAGTCGATCTGGTCGTCACCAAGTACTTCAAGCAAGGCCTGCTACCGGCCGCGCTGAGTCAATCCATTGATGAGCCGTCGGCGCTGGTGCGCTTTCG TGGCGGCGTGTTCAAGCCAGGCGACGCCTACGGCAAAGAGGTCGATTCGTACATGCATCGCGCCTTTGTCGACGTGATCTGGCGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGAATGGCCATGGGAGTGCCCGAAATGAACCGCTACCTCAGGAACAGCCAGGCGATGAAAGGTTCGATCAGCCTGTTGGTCGCAGCGATGCTGCTGGC CGGCTCGCCGGCGTTCGCCAACGTTGAACCGGTGGTCAAGCCGGGCAACGTGGTCAAAGGTCTGCAACAAGCCAAGACCTACACCGTCAGCAGCGCGCCG ATCGCACCACTGGAGCTGGCCACGCCGACCCTGCCCGACCTCAAAGGCTATACGGCCGAAGCGGTCGCGGCCAAGATCGTGCGCAGCAAGCCCGGCAAGA TCAGCGTGCGGCGGATGATGCAGGAAAATGCCTTGAAGGACTTCATCGGCGGTGACAACAAGATGGCCGAGTGGGTCGTGCGTCAGCACGGCATCCCACA GGCCATCTTCGTCGACGATGGCTACATGAACCTCAAGGACCTGGCCAAGAAGGTGCCCAAGTACGTCATCGAAACTTCGCCAGGTGTCTACCTGGCGAAG
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| Amino Acid Sequence |
>alginate regulatory protein
MKLNPFVQAGIGLSFALLWSCPTLAALTDSKNFGLEVKITGQSEDDRDLGTQSGGDVNGVGLDLRPWVYGESESGAWSAYAMAQAVTSSDIIETDTLQQS DGSTQQTDSGDREAKKSYLAMREFWIGYRGLTPYPGEQLKFGRQRLRNDDGQWRDTNIEALNWTFDTTLLRANLGVAERFSEYRTDLKELSPKDKDRLHV YGDVGYQWMPGQWAGIRAHHSHDNGSLDYPTPGEATDTLDKTQNGDISWLGLEANSDAYNWRNTNTVNYWASITGMSGERDTVNPLNADGTRPTEAKHSD DVDGWATDLGIRLRLDPQWQVGAAYARASDEYQQNGLQSNRSNFTGTRSRVHRFGEAFRGEMANTQSASLFGSWQLRDEYDASLVYHKFWRVDGNKPVGS NGINAVENNTDDVTGAILSTSSLPLNDGEKDLGQEVDLVVTKYFKQGLLPAALSQSIDEPSALVRFRGGVFKPGDAYGKEVDSYMHRAFVDVIWRF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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