Pseudomonas sp. LAIL14HWK12:I5, F629_RS0123425 (relA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00023.23_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTTCGCCCTGCCGCTGGCCCGCCAGGCGCGCGAAGTGGTGGCTGTGGAAGGTGTACAGGCCATGGTCGATCGGGCCGCGGCCAATGCCCGAAACAACAA TGTGCATAACGCACGGTTTTTTCAGGCCGATTTATCGCAGCCTTTGGCAGGCACCGGATGGGCCGCCGAGGGCTTTTCTGCGGTACTCTTGGATCCACCG CGCGACGGTGCTTTCGAGGTGGTGCAAGGCATCGCACGCCTCCAGGCCAAACGGCTGGTCTACGTATCGTGCAACCCGGCCACGCTGGCGCGAGACGCCC AGGTGCTGGTCGGCCAGGGGTACCGGTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAAACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGG CTAGCAGACTGGCCCCTTGGTGCGGCTTCCATGGAATGGCAGCCGCACGGTGATCGCCAGCGCATCCGCGTGGTGCGCTGTATGGAAAGGTAAAACAAAG
|
|
| DNA Sequence for Gene |
>F629_RS0123425
|relA
ATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACCGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATC GCGCAGCGCTGAAAGAGGCCTGCGAGTTTGCCCACGAGGTCGAGAAAAAGGGCAACCCGGCCAAGCATTCCTGGGCGGACGGTACGTCCAGCTTCCAGGC GGGGCTGGAGATCGCCGAAATCCTCGCCGACCTCAAGCTCGACCAGGACTCTCTGGTGGCAGCGGTCATCTACCGCTCGGTGCGCGAAGGCAAGGTCACC CTGGCTGAAGTCAGCCAACGTTTTGGCCCGGTGGTGTCGAAGCTGATCGACGGCGTGCTGCGCATGGCCGCCATCAGTGCCAGCCTCAGCCCGCGGCAGT CGCTGGTGCTGGGCTCGCAGGCGCAGGTCGAGAACCTGCGCAAGATGCTCGTGGCCATGGTCGACGACGTGCGTGTGGCGCTGATCAAGCTGGCCGAGCG CACCTGCGCGATCCGTGCGGTCAAGGCTGCTGACGACGAGAAACGCCTGCGTGTCGCGCGCGAGGTGTTCGACATCTATGCGCCGCTGGCGCACCGCCTG GGTATCGGCCACATCAAGTGGGAGCTGGAAGACCTGTCTTTCCGCTACCTCGAACCCGACCAGTACAAGCAGATCGCCAAACTGCTGCACGAGCGCCGGC TGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGTTGCAGAACGAGTTGCTGGCCACGGGCGTGAAGGCCGATATCAGCGGTCGGGCGAAACACAT CTATTCGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAATTCAGCCAGATCTACGACGTGCGTGCGGTGCGGGTGCTGGTGCCGGAAATCCGCGACTGC TACACCGCGCTGGGCATTGTGCACACGCTGTGGCGGCACATCCCCAAAGAGTTCGACGACTACATCGCCAACCCCAAGGAGAACGGCTATCGCTCGCTGC ACACGGCGGTGATCGGCCCGGAGGGCAAGGTGCTGGAAGTGCAGATCCGTACCCACGGCATGCACGAAGAAGCCGAGCTCGGCGTATGCGCCCACTGGCG CTACAAGGGCACCGACGTCAAGCCGAGCTCCAACCACTACGAAGAGAAGATCTCCTGGCTGCGCCAGGTGCTGGAGTGGCACGAAGAGCTGGGCGACATC GGTGGCCTGGCCGAGCAGTTGCGCGTCGACATCGAGCCGGACCGGGTTTACGTATTCACACCGGACGGCCATGCCATCGACCTGCCCAAGGGTGCCACGC CGCTGGACTTCGCCTACCGCGTGCACACCGAGATTGGCCATAACTGCCGTGGCGCCAAGATCAACGGCCGTATCGTACCGCTGAACTACAGCCTGCAGAC CGGCGAGCAGGTCGAGATCATCACCAGCAAGCACGGTAACCCCAGCCGCGACTGGTTGAACTCCAACCTGGGCTATGTCACCACCTCGCGGGCGCGGGCC AAGATCGTGCACTGGTTCAAGCTGCAGGCGCGCGACCAGAACGTCGCCGCTGGCAAGACCTTGCTCGAACGTGAACTCAGCCGCCTGGGCCTGCCGCAGG TCGACTTCGAGCGCCTGGCCGAGAAAACCAACGTCAAGACCGCCGAGGACATGTTCGCCTCGCTGGGGGCGGGCGACCTGCGCCTGGCCCATCTGGTCAA TGCTGCCCAGCAGCTGCTGGAACCCGAGCGTGTCGAGCAGATCGAGCTGGTGCCGCGCAAGCCTACCGGCCCGCGTACTGGCAAGCGTGGTGATATCCAG ATCCAGGGGGTCGGCAACCTGCTGACGCAGATGGCCGGCTGCTGCCAGCCGCTGCCGGGCGATGCCATTGTCGGCTACATCACCCAGGGCCGTGGCGTGA GCATCCACCGCCAGGACTGCGCCTCGGTGCTGCAGCTGGCGGGCAAGGAGCCGGAGCGCATGATCCAGGTGAGCTGGGGGCCGATCCCGGTGCAGACCTA CCCGGTTGACATCGTTATTCGTGCCTACGACCGCCCGGGCCTGCTGCGCGACGTTTCGCAGGTGCTGCTGAACGAGAAAATCAACGTGCTGGCGGTGAAC ACCCGCTCGAACAAGGAAGACAACACCGCGCTGATGTCGCTGACCATCGAGATTCCAGGCCTGGACGCGCTGGGGCGCCTGCTGGGGCGGATTTCGCAGT TGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACTGCGGCGCCTGCTTCGAGGGTAAACCCGCTCCTACCCCTGTAGGAGTGGGCTTGCCCGCGAAGAGGGCGCCACCGAAGGACCTGCCTACATGACCTA CACCCTCGAAGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGTTGCCCATGGGACCTCAAGCAGAACTACGCGAGTATCGTCCCGCAC ACGATTGAAGAAGCCTACGAGGTCGCCGACACCATCGAGCGCGGTGATTTCGAGCACCTGCAAGGTGAGCTGGGCGACTTGCTGTTCCAGGTGGTCTACT ACAGCCAGCTGGCCCGGGAGGAGGGGCGTTTCGAGTTCGATGGCGTGGTCGACAGCATCACCCGCAAGCTGATTCGTCGCCATCCACATGTATTCCCTAC CGGCGAGCTTTATGCGCCGCTGGATACCCCCAGCCTGAGCGAGGCCCAGGTCAAGTCCCGTTGGGAGGAGATCAAGGCCGAGGAGCGGGCCGAGAAAAGC
|
|
| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRVHQPVNTDGSINLEAWLDHVVSVDSALDRAALKEACEFAHEVEKKGNPAKHSWADGTSSFQAGLEIAEILADLKLDQDSLVAAVIYRSVREGKVT LAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLAHRL GIGHIKWELEDLSFRYLEPDQYKQIAKLLHERRLDRERFISDVMNQLQNELLATGVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEIRDC YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHGMHEEAELGVCAHWRYKGTDVKPSSNHYEEKISWLRQVLEWHEELGDI GGLAEQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSKHGNPSRDWLNSNLGYVTTSRARA KIVHWFKLQARDQNVAAGKTLLERELSRLGLPQVDFERLAEKTNVKTAEDMFASLGAGDLRLAHLVNAAQQLLEPERVEQIELVPRKPTGPRTGKRGDIQ IQGVGNLLTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLAGKEPERMIQVSWGPIPVQTYPVDIVIRAYDRPGLLRDVSQVLLNEKINVLAVN TRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|