Pseudomonas sp. LAIL14HWK12:I5, F629_RS0123220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00023.23_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGCCTTTGTAGGAGAAGCGCGTGGTGCCGTCGGGCATCAGGCCCTTGCCTTGGGTAGCACGGATGGCCTGGCACAGGTTGGTCTTGCCCGAGAGGCA GAATTTGCACTTGCCGCATTCCGGGGTGTAGAGCGGAATCACATGATCGCCAACGGCTACCGAGGTCACGCCCTCGCCTACCGCTTCAACGATCGCGCCA CCTTCGTGGCCGAGGATCGACGGGAAGATGCCTTCCGGGTCGGCACCGGACAGGGTGTAGGCGTCGGTGTGGCAAACACCGCTGGCGACCACGCGCAGCA GCACTTCACCGGCCTTGGGCATGGCCACGTCGACTTCGACGATTTCCAGGGGTTTCTTGGCTTCGAAGGCTACGGCGGCACGGGACTTGATCATCAAAGG TCTCCAGACAGAGTGTCGATTCAGGCTGCAGTGTAATTCACAGCCTTTTGATGAATAATCCAGGCAAAGACAAAACATTATTGCCATACAGGGATAATCA
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| DNA Sequence for Gene |
>F629_RS0123220
ATGAGCAGCCGCTGGGAAGGTATCGACGAATTCGTCGCCGTGGCCGAATCTGGCCAGTTCACGGCAGCGGCCGAACGCCTGGGGGTTTCCTCGTCGCACA TCAGTCGCCAGATCGCCCGGCTGGAGGAGCGCCTGCAAACGCGCCTGCTCTACCGCAGTACCCGTCGGGTGACCCTGAGCGAGGCCGGGCAAACTTTTCT GCAGCATTGCCAACGCCTTCAGGATGGCCGCGAGGAAGCCCTGCGCGCCATGGGCGACTTGGCCAGCGAGCCAAAGGGGTTGCTGCGCATGACGTGCGCG GTAGCGTACGGCGAGCGCTTCATCGTGCCGCTCGTGACACGGTTCATGGCGCTGTACCCGCAGTTGCGCGTGGAGGTGGAGTTGAGCAACCACACCCTCG ACTTGCTGCACGAAGGCATGGACCTCGCCATCCGGTTGGGGCGGCTGGCCGATTCTCGGTTGGTGGCCGCCCGCCTCGCACCCCGGCGCATGTACCTGTG TGCCTCGCCGGCTTATCTGGAACGTTATGGTCGACCACACAGCCTGTCAGAGTTGGCGCGGCACAATTGCCTGGTGGGCAGTTCGGACTTGTGGGCATTG CAGCAGGATGGGCGCGAGATTAGCCAGCGGGTGCAAGGGAACTGGCGCTGCAACAGTGGGCAGGCGGTGCTGGATGCGGCGTTGCAGGGGATGGGGTTGT GCCAGTTGCCGGATTATTACGTCCTGGAGCACTTGAATACGGGGGCTCTGGTGTCGTTGCTGGAAGCGCACCAGCCGCCGAATACGGCAGTGTGGGCGTT GTATCCGCAACAGCGGCACCTGTCGCCGAAGGTGCGACGGTTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAATATCGGCTGGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGAATCCATTGCCTGTACCGGCCTATTCGCGGGCTTGAGACTTCAGCGGCGCCCAGCCCAGCGCTGACGCAACCACTCCAGGTCTTCGGGGCGCGTGAC CTTGATGTTGTCACTGCGCCCTTCCACCAGCCGCGGCGCCTGGCCGGACCACTCGATGGCCGAGGATTCGTCCGTCACGACCACATCCGACACCAGGCAC TCGGCCAACGCCCGGTGCAGTGCCCCAAGGCGGAACATCTGCGGTGTGTAGGCCTGCCAGATGGTGCTGCGGTCCACGGTAGCACTTACCCGGCCGCTGC CATCGGCACGCTTGAGGGTATCGCGCGCCGGTACCGCCAGCAAGCCACCCACCGGGTCGTCCGCCAGCTCCGACAGCAGCTTGTCCAGGTCGCTGCGCGC CAAATTCGGCCGCGCAGCATCATGCACCAGCACCCAGTCGCTGTCAGAGGCGCCTTGCGCATGCAGCCACAGCAAGGCATTGAGCACCGAATCGGCACGC
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLSEAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCA VAYGERFIVPLVTRFMALYPQLRVEVELSNHTLDLLHEGMDLAIRLGRLADSRLVAARLAPRRMYLCASPAYLERYGRPHSLSELARHNCLVGSSDLWAL QQDGREISQRVQGNWRCNSGQAVLDAALQGMGLCQLPDYYVLEHLNTGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYLKEGLAGLPEYRLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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