Pseudomonas sp. LAIL14HWK12:I5, F629_RS0121940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00019.19_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGTGATCTCCCGCGACGAGGGCGGCTTCAAGGGCCCGGCACTGCTGCAGAACATTCTGGAAAGTGGCTTGCGCTTCGGCGAAATGGACATCTTCCACC GCCACGAGAGCATGGCCGGCCACGGCGAAGTGCTGTTCTCCATGGCCAACGCGGTCAAGCCTGGCGTCTTCGACCTGGACGACATCGACCACTTCAGCAC CCGTGCCGTCAGCTTCTTCCTCGGCTTGCCGGGCCCGCGCCATCCGAAGCAAGCCTTCGACGTGATGGTGGCTGCGGCACGCAAGCTGGCCCACGAACTG AACGGTGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACGATCGAGCACTACCGCCAGCGTATCGTCGAGTTCGAGCGCCGCGCGCTGACCC AGAAGCGCTGATGTGCCCAAGTGGGCAGACCTCTGTCCACCCTGTTTCAAGCGCAAGAGCAGCCAAGGGCTGCTCTTTTGCTATGCAAGAGAACCTGAAA
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| DNA Sequence for Gene |
>F629_RS0121940
ATGACCGCCGAAACCCGTATCCACGAACTGCGTGCCGAGCTCGACCAGCACAACTACCGCTACTACGTGCTCGATGAGCCCAGCGTGCCGGATGCCGAAT ACGACCGCCTGTTCAACGAGCTGAAGGCGCTTGAAGCCGAGCACCCGCACCTTGTCACACCCGACTCGCCCACCCAGCGTGTCGGCGGTGCTGCCCTGGC CGCCTTTAGCCAGGTGCGCCATGAAGTCCCGATGCTCAGCCTGGGTAACGCTTTCGAAGAAACCGACCTGCGTGAGTTCGGCCGCCGCGTTGTAGAAGGC CTCGATCAGCCTGGCGCGGTCGACTACAGCTGCGAACCCAAGCTCGACGGCCTGGCCGTGAGCCTGCTGTACCGCGATGGCCAGCTGGTGCAGGGCGCTA CCCGTGGCGATGGCACCACCGGCGAAGACATCAGCGCCAACGTGCGCACGGTGCGCAACATCCCGCTCAAGCTGCAGGGTGAGGGCTGGCCGGCGGTGCT GGAGGTGCGCGGCGAGGTGTACATGAGCAAGGCCGGTTTCGACCGGCTCAATGCAGCCCAGGCCGAAGCCGGTGGCAAGACGTTCGCCAACCCGCGCAAC GCCGCCGCCGGCAGCCTGCGCCAGCTGGATTCGAAAATCACCGCCAGCCGCCCGCTGGAGTTTTGCTGCTATGGCGTTGGTCAGGTGTCTGAAAGCATCG GCGACAGCCATATTGGCATCCTTGAACAGCTCAAAGCCTGGGGGATGCCGATCAGTCGCGAGCTCAAGCATGCGGCAGGCATCGAAGAATGCCTGGCCTA CTACCGCGACATCGGCGAGCGACGTAACAGCCTGCCGTATGAAATCGATGGTGTCGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGCGAGTTGGGCTTC CGTGCGCGTGAGCCACGGTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGACGTCGAATTCCAGGTTGGCCGCACGGGGG CGGTAACGCCTGTCGCGCGCCTGAAGCCGGTCAAGGTTGCGGGGGTGACCGTGTCCAACGCCACCTTGCACAACATGGACGAAATCGCCCGCCTGGGCCT GCGCATCGGTGACACGGTAATCATTCGCCGTGCCGGTGACGTGATCCCGCAGGTGATGCAGGTGGTGCTGGAGCGTCGCCCGGAAGATGCCCGCCCGGTC GAGGTGCCGAGCGCGTGCCCGGTGTGTGGCTCGCAGGTCGAGCGTACTCAATTGGTCAAACGCAGCAAGGGCAAGGAAACCACCAGCGAAGGCGCGGTGT ACCGCTGCGTTGGCCGCCTGGCCTGTGGCGCCCAGCTCAAGCAGGCGATCATTCACTACGTGTCGCGCCGTGCCATGGATATCGATGGCCTGGGCGAAAA GAGCGTCGAGCAACTGGTGGACGAAGGCCTGATCGGCTCGCCGGCAGACCTGTACAAGCTGGAGTTCGACCAGATCGTTGGCCTGGAAGGTTTCGCCGAA GTGTCCAGCAAGAAGCTGCTGGATGCCATCGAGGCCAGCAAGCGCCCGGCCTTGTCGCGGTTCATCTACGCTTTGGGCATTCCGGATGTAGGCGAAGAGA CTGCAAAGGTGCTGGCCCGCTCGCTGGGCAGCCTGGCGCGCGTGCAGCAGGCATTGCCGCAGGTGCTCACCTACCTGCCGGACATCGGCCTGGAGGTTGC CTACGAGATCCACAACTTCTTTGAAGACGAGCACAACCGCAAGGTCATCAAGCAACTGCTCGATAGCGGCATGCAACTGCAGGACGAGGGCGAACTGGCT GCCGAATTCGCCGCCAGCACCACCCTCGCCGGCATGATTGCCAAGCTCGACATTGCCTCGGTCGGCCCGACCGGGGCCGAGAAGCTGGTGGCCAAGCTCG ACACCCTGGAAAAGATCATCGCCGCCGACGGCATCGACCTGCGCCAGGCCCTTGCGGCCAAGCAGGCGGATGCCGTGCGTGAGTTCTTCAAGAATGAAGC GAACCAGAAGCTGGCGCGGGACATCGAAGCGCAGTTGCTGGCGTTCGGCATGCACTGGACCAGCGAGAAGAAGGTGGCCGAAGGTTTGCCGCTGGCAGGC CAGACCTGGGTGCTCACCGGCACCCTGGAGCGCATGAGCCGCGACATCGCCAAGGACAAGCTGGAAAACCTGGGGGCCAAGGTGGCGGGTTCGGTGTCTG GCAAGACCCACTGCGTGGTGGCCGGGCCAGGGGCGGGGTCCAAGCTGGCCAAGGCTGCCGAGCTGGGGGTGAAGGTGCTGGACGAAGATGCCTTTGTCAC CTTCCTGGCCGGGCAGGGGGTCACGGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCCGGCGCGCGTTTCTTGTGGGGGCGGGTTTACCCGCGAAGAGGCCGGGGCTGCCACGTCAGCCCTGACAAGTCATTGAGAAATGATGACTTTTTCTC CCGCTAGAGGTTGTATCTGCCCCCAAGAACGGTACAATGGCGCCACTCGCTGTTCAGCGAGGCATGTAGTGGTGGCCCCATCGGTCCCCCCGCATTGATT ACCCGTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACATCGAGTGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTGCGCAAGTCCTTAA TTCTAAAGGACTTTTCTCGCTAAAAATCTCGAAGTGGAACAGTGCTTAGGTACACCGCAGTGGTGCACCGTAAAGGCATTCTATCTTCCATCATTCTACG TTCTCAATCCCGAAGGCGTTCAATCGCTGAACCTAAGGCATCTGCGTTGGTATCTAGAGCCTTCAGCGTAACCATCACGTTGTCATGAGCGATGGTTGAG
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEETDLREFGRRVVEG LDQPGAVDYSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGILEQLKAWGMPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPV EVPSACPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLEFDQIVGLEGFAE VSSKKLLDAIEASKRPALSRFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDTLEKIIAADGIDLRQALAAKQADAVREFFKNEANQKLARDIEAQLLAFGMHWTSEKKVAEGLPLAG QTWVLTGTLERMSRDIAKDKLENLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAGQGVTV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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