Pseudomonas sp. LAIL14HWK12:I5, F629_RS0121205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00018.18_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGGCCACTGGCGAGGATATTCCGCTGGAAGAGCGCGCGTCCGACGAACTGCTGGACATTGCCGGTACCCGGGTGGCGCCGGATGTGGAGGTGTTCAA TCCGGTGTTCGACGTGACCCCGGCCGACCTGATCGATGTGATCGTGACCGAGCGAGGCATTGTCGAACGCCCTGATACCGCCAAACTGGCGCAGTTGATG TGCCGCAAGCGGTTGCATTGAGCTGGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCTCAAACACCGAAAAACTAAAGGCAAGCACCCCCGTGCCACA TCTCCCCACCGCCCCCGCCTTTGTGATAACATCCGGCAGTTTCCAGGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGAT TTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
|
|
| DNA Sequence for Gene |
>F629_RS0121205
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGC TGCCCGATGCGCGTGACGGCTTGAAGCCCGTGCATCGTCGCGTTCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGC CCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGCTGCGCTAC CTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCCGCAGCCATGCGATACACCGAAGTGCGCATGACCAAGCTGGCCCACGAGC TGCTGGCCGACCTGCACAAAGAAACCGTCGACTGGGTGCCCAACTACGACGGCACCGAGCAGATCCCGGCGGTCATGCCGACCCGTATTCCCAACCTGCT GGTCAACGGCTCCAGCGGTATCGCCGTGGGCATGGCGACCAACATCCCGCCGCACAACCTCGGTGAAGTCATCGACGGCTGCCTGGCGCTGATCGACAAC CCGGAAGTCACCATCGATGAGCTGATGCAGCACATCCCGGGCCCGGATTTCCCGACTGCCGGCATCATCAATGGTCGCCAAGGCATCATCGAGGCCTATC GTACCGGCCGTGGCCGCATCTACATGCGTGCCCGTTCCGAAATCGAAGACATCGACAAGGTCGGCGGCCGCCAGCAGATCGTCGTGACCGAGTTGCCGTA CCAGCTGAACAAGGCGCGCCTGATCGAAAAGATCGCCGAGCTGGTAAAAGAGAAGAAGATCGAAGGCATCACCGAGCTGCGCGACGAGTCCGACAAGGAC GGCATGCGCATCGTCATCGAGCTGCGTCGCGGCGAGGTGCCGGAGGTGGTGCTCAACAACCTCTATCAGCAAACCCAGCTGCAGAGTGTGTTCGGTATCA ACGTGGTGGCCCTGGTCGACGGCCGTCCGCGCCTGCTCAACCTCAAGGACCTGCTCGAAGCGTTCGTCCGTCACCGCCGTGAAGTGGTGACCCGGCGTAC CGTGTTCGAGCTGCGCAAGGCCCGCGAACGCGGCCACATCCTTGAAGGCCAGGCGGTCGCGCTGTCCAACATCGACCCGGTCATCGCCCTGATCAAGGCC TCGCCGACGCCGTCCGAAGCCAAGGAAGCCCTGGTTTCCACGCCGTGGGAATCCAGTGCCGTGCAGGTCATGGTCGAGCGCGCCGGCGCCGATTCCTGCC GCCCTGAAGACCTGCCAGAGCAATACGGCCTGCATGACGGCAAGTACTTCCTGTCGCCAGAGCAGGCCCAGGCCATTCTCGACCTGCGCCTGCACCGCCT GACCGGCCTTGAGCACGAGAAGCTGCTGGCCGAGTACCAGGAAATCCTCGAGCAGATCGGCGAGCTGATCCGCATCCTCAGCAGCGCCGAGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGCCATCCGTGCCGAATACGGCGATGCCCGGCGTACCGAAATTCTCGATGCGCGCCACGACCTCAGCTACGGCGACA TGATCCCGGAAGAAGAGCGTGTGGTCACCATCTCCCACGGCGGCTACGCCAAGACCCAGCCGCTGTCCGCCTACCAGGCCCAGCGCCGTGGCGGCAAAGG CAAGTCGGCTACCGGGGTGAAGGACGAGGACTATATCGAGCACCTGCTGGTCGCCAACAGCCACGCTACCTTGTTGCTGTTCTCCAGCAAGGGCAAGGTG TACTGGCTGAAAACCTACGACATCCCTGAAGCGTCCCGCGCTGCCCGTGGTCGCCCGCTCGTCAACCTGCTGCCGCTGGAGGAGGGTGAGCGCATCACCG CCATGCTGCAGATCGACCTCGAGGCCCTGCAGCAGAGCGCTGGCGCCGAAGAAGAGCTGGACGAGGCGGAAGATGCCGTACTCGAAGGCGAAGTGATCGA GGCCGAGGAAGTCGACGAAGAAGACGGCGATACCCCTGAGTGGGTGGCCGAGCCGACTGGCGCCTACATCTTCATGGCCACCGCTTCGGGTACCGTGAAG AAGACCCCACTGGTGCAGTTCGCCCGTCCGCGCTCCAACGGCCTGATTGCCCTCAAGCTGAAAGAAGGTGACACCCTGATCGCTGCCGCCATTACTGACG GCGCCAAGGAAGTCATGATGTTCTCCGACGCCGGCAAGGTGATCCGCTTCGCTGAAAGCGTGGTGCGCGAAATGGGCCGTAACGCCCGTGGCGTACGCGG CATGAAGCTGGGCAAGGGGCAGCAGATCATTTCCATGCTGATCCCGGAATCGGGTGCGCAGATCCTGACTGCCTCCGAGCGTGGCTTCGGCAAACGCACC CCGCTGTCCAAGTTCCCGCGTCGCGGCCGCGGTGGTCAGGGCGTGATCGCCATGGGTACCAAAGGGCGCAACGGTCTGCTGATCGGCGCCATCCAGGTGC AGGAAGGCGAAGAGATCATGCTGATCTCCGACCAGGGTACGCTGGTGCGTACACGGGTAGGTGAGGTGTCCAGCCTGGGCCGTAACACCCAGGGCGTGAC CTTGATCAAGCTGGCTACCGACGAGACGTTGGTGGGCCTGGAGCGTATCCAGGAGCCTTCCGAGGACGAACTCGATGATGTGATCGAGACGGACGAAGAG GGCGTCGAGGCTGAGGCGCCAGACAACGAAGAAGCTGCTGGCGCCGAAGAGGCCCCGCAGGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAGCGTAAACCCGAGCGGGGCGACCAAGGTCGCCCCGTTTGACTGAATAGGCCGGGCATTGCCTGGCCCTGTGGGAGCGGGCTTGCCCGCGAATGAGG CGCCGCGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTTCCCGCAGAACTAGCTGTTTAGATCTATTAGAGCGAGAGT GGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCCGCGCTTCCTGACGCTGTTTTGCAGCGCGCCCAGGCCGAAATGCTGGACTGGAACGGC AAGGGCTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGACTACGTGGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTCCCCT CCAACTACAAGGTGCTGTTCCTGCAGGGCGGCGCCAGCCAGCAGTTCGCTGAAATCCCGCTGAACCTGTTGCCGGAAAACGGCACTGCCGACTACATCGA
|
|
| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKD GMRIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALVSTPWESSAVQVMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGELIRILSSAERLM EVIREELEAIRAEYGDARRTEILDARHDLSYGDMIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV YWLKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSAGAEEELDEAEDAVLEGEVIEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVK KTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKGQQIISMLIPESGAQILTASERGFGKRT PLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLATDETLVGLERIQEPSEDELDDVIETDEE GVEAEAPDNEEAAGAEEAPQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|