Pseudomonas sp. LAIL14HWK12:I5, F629_RS0119035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 608 | 842 | 9.58098E-106 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 428 | 591 | 8.2E-43 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 608 | 840 | 1.5E-69 |
| Coils | Coil | Coil | - | - | 596 | 616 | - |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 288 | 857 | 0.0 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 426 | 605 | 7.2E-59 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 437 | 592 | 2.12E-48 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 316 | 418 | 7.13041E-7 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 427 | 593 | 4.1E-41 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 421 | 592 | 1.4E-63 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 307 | 373 | 3.5E-7 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 433 | 590 | 1.85918E-51 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 380 | 421 | 0.0083 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 293 | 419 | 1.8E-20 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 293 | 419 | 3.14E-22 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 602 | 845 | 2.1E-105 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 606 | 860 | 1.3E-93 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 433 | 587 | 7.5E-49 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 607 | 853 | 2.22E-85 |
| Pfam | PF13188 | PAS domain | IPR000014 | PAS domain | 307 | 364 | 1.2E-7 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 303 | 426 | 6.6E-11 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 62 | 213 | 1.7E-12 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.