Pseudomonas sp. LAIL14HWK12:I5, F629_RS0118300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00014.14_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGACTTCGCCCGCCAGCCCAAGCTGGATGCTGCCGAGCGGCGCGCACGTATCGACCATGCGATTGCCGCCGTGGGCCTGGCCCACGCCCGTGGCCAGTAC CCGGCGCAGTTGTCCGGCGGCATGGCCCAGCGCACGGCGCTGGCCCGTTGCCTGGCCCGCCAGCCCGAAGTGCTGTTGCTGGACGAACCGTTCGGCGCGC TGGATGAAGTGACCCGGGCCGACATGCAGCAACTGCTGCTGCAACTGATCGCCACCCACAACACGGCGGCGGTGCTGATCACCCACGATATCGACGAAGC CCTGCTGTTGTCCGACCGGGTTCTGCTACTGGGCAACCACCCAGCGCACATCCTCGGCCAATGGCACATCGACCTGCCGCAACCACGCGCGCAGCGGGTT GAAGAACTGGGTGCCTTGCGTATCGAAATCCTCAAAACCCTTCGGCGGGCAAGCCGCACCGTAGAACCTACCCCAACCCCGTTGCCCTCGGAGGCTGTCC
|
|
| DNA Sequence for Gene |
>F629_RS0118300
ATGTGCATGGATGACTGCTGTTCCTCTTCTTCGCGTCGCGATTTCCTCAAGCTTGGCGCCATGCTTACGGCGGCGGGTGCACTGCCATTGCTGTCGAGCC TGCAGGCGCGCGCTGCCGCCGAGCCGGACGCGCCGGTGCGCATCGGCTACCTGCCGATCACCGATGCCACGCCGTTGCTGGTGGCGCACAACAATGGCCT GTTCGAGGCCGAAGGCATCAAGGCCGAGCGCCCGGTGCTGTTGCGCAGTTGGGCACAGGTGATCGAGGCGTTCATTTCCGGCCAGGTCAACGTCATCCAC TTGCTGTCGCCGATGACGGTGTGGGCGCGTTACGGCAGCAAGGTGCCGGCCAAGGTCGTGGCGTGGAACCACGTGGGCGGTTCGGGCCTGACCGTGGCTC CGGACATCACCGACATGAAACAGCTCGGTGGCAAGACCGTGGCCATCCCGTTCTGGTACTCGATCCATAACGTGGTGCTGCAGCAAATGCTCAACGACAA CGGCCTGACGCCAGTGTCGAAGCCGGCCAACGCTCAGTTGGCTGCCAACGAAGTCAACCTGCTGGTGCTGCCGCCCTCCGACATGCCGCCCGCTTTGGCC AGCAAGCGCATTGCCGGCTACATCGTCGCCGAGCCGTTCAACGCCCTGGCCGAAAACCTCAAGGTTGGCCGCGTGCAGCGTTTTACTGGCGATGTGTGGC GTAACCACGCGTGCTGCGTGGTGTTCATGCATGAGCATGATCTGAACAACCGCCCGGAGTGGTCGCAGAAGGTGGTCAACGCCATCGTCAAGGCCCAGCA CTGGACCCGCGACCACCGCGCTGAAGCCGCTGCCTTGCTGTCCAAGGCCGGCCCCAACAAGTACACCCCGCATGAGCCTGCCGTGCTGACCAAGGTGCTG GCCCCGGCCGCCGAGGACCGTGCCGGCTACATTGCCAGTGGTGCCATTCGGCATCAGCAGTGGGACGAAAAGCGCATCGACTTCCAGCCGTATCCGTTCC CCAGTTACACCGAGGAACTTGTCAAACGCCTGAAAACCACCCTGATCGAAGGCGACAATGCGTTTCTTGCCGGGCTTGATCCGGCGCAGACGGCCCGCGA CCTGGTCGACGACCGATTCGTGCGCAATGCCATCGCTGCGGTGGGTGGCCCGTCGGTGTTCGGCATTGCCGACAACTTCGAGCGTAGCGAGGAGTTTGCG GTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCGCACGCATGTCGTACATGCCGGCCTTGGCCTGGCCGGGTTGCTGGGTTTGTTGCTGCTGTGGTGGGCCGGTGTTGCCTTGTTCGGCCAGGCCGACGG CCTGTCGGCGCGCTTTTCTCCGGCGGCAACCTTGGCCAGCCTGTTCGAGTTGCTGGGGCAGGGTGAGGTCTACGGGCATATCTGGGTCAGCCTCAAGCGC ATCCTGGTCGGGCTGTTGCTGGCACTGCTCATCGGCGTGCCGCTGGGTTTGCTGGTCGGCAGTTACCGGCACCTGGAGGCGGCAACTACCCCGGCGTTCC AGTTCCTGCGCATGATCTCGCCGCTGTCGTGGATGCCGGTGGTGGTGATGCTGATGGGGGTGGGCGACCAGCCTATCTACTTCTTGCTGGCGTTCGCCGC GTTGTGGCCGATTTTGCTGAACACGGCGGCCGGGGTCAGGCAGCTGGACCCACGCTGGTTGCAACTGAGCCGCAGCCTGAGTGCCACGCGTTGGGAGACG
|
|
| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MCMDDCCSSSSRRDFLKLGAMLTAAGALPLLSSLQARAAAEPDAPVRIGYLPITDATPLLVAHNNGLFEAEGIKAERPVLLRSWAQVIEAFISGQVNVIH LLSPMTVWARYGSKVPAKVVAWNHVGGSGLTVAPDITDMKQLGGKTVAIPFWYSIHNVVLQQMLNDNGLTPVSKPANAQLAANEVNLLVLPPSDMPPALA SKRIAGYIVAEPFNALAENLKVGRVQRFTGDVWRNHACCVVFMHEHDLNNRPEWSQKVVNAIVKAQHWTRDHRAEAAALLSKAGPNKYTPHEPAVLTKVL APAAEDRAGYIASGAIRHQQWDEKRIDFQPYPFPSYTEELVKRLKTTLIEGDNAFLAGLDPAQTARDLVDDRFVRNAIAAVGGPSVFGIADNFERSEEFA V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|