Pseudomonas sp. LAIL14HWK12:I5, F629_RS0117165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00012.12_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAAAGCCCTGCTGGAAAACGAAGTCAACCGTCTGCGCGTGCAGGCTGTTCAGCAGTTCGGTGGCAACATCAAGCCAGAGCAACTGCCAGCCGAGCTG TTCGAAGAGCAAGCCAAGCGCCGCGTTGTGCTGGGCCTGATCGTTGCTGAAGTGGTCAAGCAGTTCGAACTGAAGCCGGACGACGCCAAGGTTCGCGAAA TGATCGAAGAAATGGCTTCGGCTTACCAGGAGCCTGAGCAGGTCATCGCCTGGTACTACAAGAACGACCAGCAACTGAACGAAGTGCGTTCGGTTGTGCT GGAAGAACAAGTTGTAGATACTGTTCTGCAGAAAGCGACTGTGACCGACAAGTCGGTCTCGTACGAAGATGCCGTTAAACCAGCACAGGCTCCTGCCGAA GCTGAGTAATACGGTTCTCTCGTAGGAAACCCCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGAC
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| DNA Sequence for Gene |
>F629_RS0117165
ATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTT ACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTAATTTTCCTGGTCGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAACTGCTGTTCCT TGAAGCGGAAAACCCGGACAAGGATATCCATCTGTACATCAACTCGCCGGGTGGCTCCGTCACCGCCGGCATGTCGATTTACGACACAATGCAGTTCATC AAGCCGGACGTTTCGACCATCTGCATCGGCCAGGCCTGCAGCATGGGCGCCTTCCTGCTGGCTGCCGGTGCCAAGGGTAAGCGTCACTGCCTGCCGAACT CGCGCGTGATGATCCACCAGCCGTTGGGCGGCTTCCAGGGGCAGGCGACCGATATCGAGATCCATGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAA CGAGCTGCTGGCCTACCACACCGGCCAGGACCTCGAGACCATCAAGCGCGACACCGAACGTGACAACTTCATGAGCGCCTCGCGCGCGGCCGAGTACGGC CTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCGGGGTGCCAGAGCAGGTAGGTGCGCAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGA TCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGC CGGGCCCTCGGTATTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGTGAGGAGGTGCAGGAAGCCCAGGCCGAGAGCAGCGCGCACAAA TTACCTTCGCCGAAAGAAATCAGCGGCATCCTGGACCAGTACGTCATTGGTCAGGAGCGCGCGAAGAAGGTGCTGGCCGTAGCGGTGTACAACCACTACA AGCGCCTGAACCAGCGTGACAAGAAGGGTGACGAAGTCGAACTGGGCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACCCTGCTCGC
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| Amino Acid Sequence |
>ATP-dependent Clp protease proteolytic subunit
MSRNSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFI KPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYG LIDSVYDKRQLAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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