Pseudomonas sp. LAIL14HWK12:I5, F629_RS0116060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00011.11_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAATAAGGGCAGCGCTGTGCGTTTGCGCCTGATCGCGGTCGGCTCGCGCATGCCGAAGTGGGTCGAGGAAGGCTGGCATGAATATGCCAAGCGCCTGCCT GCCGAGCTTTCGCTGGAGCTGGTGGAAATCCCGCTGAACACCCGTGGCAAGAATGCCGACGTCGCCCGCCTGATCCGTCAGGAGGGCGAAGCCATGCTGA GCAAGGTGCAGCCTGGGGAACGCATTGTCACCCTCGAGGTCCATGGCAAGCCCTGGAGTACCGAGCAGCTGGCGACCGAGCTGGACCGCTGGCGCCTGGA TGCGCGCACGGTGAATTTGATGGTGGGGGGCCCGGAAGGCCTTGCGCCTGAGGTCTGTGCGCGCGCCGAGCAACGTTGGTCGCTGTCGCCGCTGACCCTG CCGCACCCGTTGGTAAGGATACTCATCGGCGAGCAGATCTACCGCGCCTGGACCGTGTTGTCCGGGCACCCTTACCACAAATGAGTCTGTAAGCAGTCCG
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| DNA Sequence for Gene |
>F629_RS0116060
ATGTCGCAGCCGATCCGTCTCAAGGACCACGAGAAAGACGCCCGCCTGGTGCGCAACCGCGTCGTGGTTGGCGCGGTGGCGATCATGCTGCTTATTTGTG TGCTGATCGCGCGGCTGTATTACCTGCAGATCATCCAGTACGACTACCACTCGACGCTGTCGGAGAACAACCGGGTGCATGTGCAGCCGATTCCGCCGAC TCGCGGGCTGATTTTCGACCGCAACGGGGTGATCGTTGCCGACAACCGGCCTAGCTTCAGCCTGTCGATGACCCGCGAACGTGCAGGTAACTGGCAAGAA GTGCTGGATACTATCGTCGAAGTGCTGGAGCTGACTGCCGACGACCGGGCGCTGTTCGAGAAGCGCATGCGTCAGGGCCGTAGGCCCTTCGAGCCGGTGC CGATCCTGTTCGAGCTGAATGAAGAGCAGATCGCCCGGGTGGCAGTAAACCAGTTCCGCCTGCCAGGTGTGGAAGTGGTTGCGCAGCTGGTGCGGCATTA TCCGCAGGGGGCGCATTTCGCCCATTCGGTGGGTTATGTGGGGCGCATCAACGAGAAAGAGCTGAAAACCCTCGACCCGGTGAACTACAGCGGCACCCAC CATATCGGCAAGACCGGCATCGAGCGCTTCTACGAAGACGCCTTGCACGGCCAGGTCGGCTACGAGGAAGTCGAGACCAACGCCCGTGGCCGTGTGCTGC GAGTGCTCAAGCGCACCGACCCGAAACCTGGCAAGGACATCGTGCTGAGCCTGGACATCAAGCTGCAGGAAGCCGCCGAAGCCGCGCTGGGCGGCCGACG TGGCGCAGTGGTGGCGCTCGACCCGCGTACTGGCGAGGTGCTGGCGATGGTCAGTCAGCCAAGTTTCGACCCCAACCTGTTCGTGACGGGCATCAGCTTC AAGGCCTATGCCGAACTGCGCGACTCGATAGACCGGCCGCTGTTCAACCGCGTGCTGCGTGGCCTGTACCCGCCGGGTTCGACCATCAAACCGGCCGTGG CGATTGCCGGCCTGGACAGTGGCGTGGTCAACGCCAGCAGCCGGGTGTTCGACCCGGGCTACTACCAGTTGCCCAACTATGACCACAAATACCGTAACTG GAACCGCTCCGGCGATGGCTGGGTCGATCTGGACACCGCGATCATGCGTTCCAACGACACCTACTTCTATGACCTTGCGCACAAGATGGGCATCGATCGG TTGTCCAGCTACATGAACAAGTTCGGCATCGGCCAGCGGGTTTCCCTCGACATGTTCGAGGAGTCCGCCGGGTTGATGCCATCGCGTGAATGGAAGCGTG CCACGCGCCGCCAGGCCTGGTTCCCGGGTGAAACCCTGATTCTCGGCATCGGCCAAGGCTACATGCAGGCCACGCCACTGCAACTGGCCCAGGCCACCGC ATTGATCGCCAACAAGGGCGTGTGGAACCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGCCGCCGGTGGACGAAAACCCCATGGACAACATCGTGCTG CGTGACAAGTCCGACTGGGCCAAGGTCACCCACGGCATGGAGCAGGTGATGCACAACGCCCGTGGTACCGCACGCAAGGCGGCTGCTGGCGCCCAGTACC GCATTGCCGGCAAGAGCGGTACCGCCCAGGTGGTGGCGATCAAGCAGGGTGAGAAGTACGACCGCAACAAACTTCAGGAGCGCCACCGCGACCACGCCCT GTTCGTCGCCTTTGCCCCGGCCGATGACCCGAAGATCGTGGTCTCGGTGATGGTCGAGAACGGTGAGTCCGGCTCTGGTGTTGCTGCCCCCGTGGTACGC CAGATCATGGACGCCTGGCTGCTCGACGAAAACGGCCGGCTCAAGCCCGAGTTCGCGCCTGCCACCGTGACCCAGGAATCGGCCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAACAATTTCGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGGCGCGCCAGCTTTCTGCAGCGCATTCATGTCGACGGCCCCTTGCTGGTCATTCT GCTCACCCTTGCGGCCGGCAGCCTGTTCGTACTGTATTCGGCCAGTGGCAAGAACTGGGACTTGCTGCTCAAGCAGGCCACCTCGTTCGGCATCGGCCTG GTGTCGATGTTCGTCATCGCCCAGCTCGAGCCACGCTTCATGGCCCGTTGGGTGCCGCTGGCCTACCTGACCGGTGTGCTGTTGCTGGTGGTGGTGGACG TGATGGGCCACAACGCCATGGGGGCCACGCGCTGGATCAATATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAATTCATGAAAATCATCATGCCGGCGAC CATCGCCTGGTACCTGTCCAAACGCACCTTGCCACCGCATTTGAAGCACGTGGCCATCAGCCTTGTGCTGATTGGCGTGCCGTTCATATTGATCGTACGC
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRNRVVVGAVAIMLLICVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVIVADNRPSFSLSMTRERAGNWQE VLDTIVEVLELTADDRALFEKRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYSGTH HIGKTGIERFYEDALHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHKYRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDR LSSYMNKFGIGQRVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGQPPVDENPMDNIVL RDKSDWAKVTHGMEQVMHNARGTARKAAAGAQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPADDPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDENGRLKPEFAPATVTQESAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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