Pseudomonas sp. LAIL14HWK12:I5, F629_RS0115440 (carB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00011.11_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGACTACGCGATCCAGGCGATCAAGGAAATCCTCGAAACCGAGATCCCGGTATTCGGCATTTGCCTCGGCCACCAGTTGCTGGCCCTGGCTTCCGGCGC CAAGACCGTGAAAATGGGCCACGGCCACCACGGTGCCAACCACCCGGTCCAGGACCTGGACACCGGAGTGGTCATGATCACAAGCCAGAACCACGGTTTT GCCGTTGACGAGGCCACCCTGCCGGGCAACGTCCGCGCCATTCACAAGTCGCTGTTCGACGGCACCCTGCAGGGTATCGAGCGCACCGACAAGAGCGCGT TCAGCTTCCAGGGCCACCCTGAAGCGAGCCCAGGCCCGACCGATGTCGCGCCACTGTTCGATCGTTTCACCGATGCCATGGCCAAGCGCCGCTGAGCATC CTGCTTCAAGGCCCCGGGCCGGCTCGCGCCGCGCCCGGAAGCGCCTGACCCAGATTGTTCAAAGCGGCTTGCCGACTGACCCCGGATTTGAGTGACAACC
|
|
| DNA Sequence for Gene |
>F629_RS0115440
|carB
ATGCCAAAACGTACAGACATCAAAAGCATCCTGATTCTCGGCGCTGGCCCGATCGTGATCGGCCAGGCCTGCGAATTCGACTACTCCGGCGCCCAGGCTT GTAAAGCCCTGCGCGAGGAAGGTTTCCGCGTCATCCTGGTGAACTCCAACCCAGCCACCATCATGACCGACCCGGCCATGGCCGACGCCACCTACATCGA GCCGATCAAATGGCAGTCGGTGGCCAAGATCATCGAGAAAGAGCGCCCGGACGCCGTCCTGCCGACCATGGGTGGCCAGACCGCACTGAACTGCGCCCTG GACCTGGAGCGCCACGGCGTTCTGGAGAAGTTCGGCGTAGAGATGATCGGTGCCAACGCCGACACCATCGACAAGGCCGAAGACCGTTCGCGCTTCGACA AGGCCATGAAGGACATCGGCCTGGAGTGCCCGCGCTCCGGTATCGCCCACAGCATGGAAGAGGCCAATGCGGTCCTCGAGAAGCTGGGCTTCCCATGCAT CATCCGCCCATCGTTCACCATGGGCGGTACGGGTGGTGGTATCGCCTACAACCGTGAAGAGTTCGAAGAAATCTGCACCCGTGGTCTGGACCTGTCGCCG ACCAAAGAGCTGCTGATCGACGAATCGCTGATCGGCTGGAAAGAGTACGAGATGGAAGTGGTCCGTGACAAAAAGGACAACTGCATCATCGTCTGCTCGA TCGAGAACTTCGACCCGATGGGCGTGCACACCGGTGACTCGATCACCGTTGCTCCGGCACAGACCCTGACCGACAAGGAATACCAGATCATGCGCAACGC CTCGCTGGCGGTGCTGCGTGAAATCGGTGTTGAGACCGGCGGTTCCAACGTGCAGTTCGGTATCTGCCCGAACACCGGCCGCATGGTCGTGATCGAGATG AACCCGCGTGTGTCGCGTTCCTCGGCACTGGCCTCCAAGGCTACCGGCTTCCCGATCGCCAAGATCGCTGCCAAGCTGGCCATTGGTTACACCCTCGACG AACTGCAGAACGACATCACCGGCGGCCGCACCCCGGCGTCCTTCGAGCCGTCGATCGACTACGTCGTCACCAAGCTGCCACGCTTCGCCTTCGAGAAATT CCCGAAAGCCGATGCCCGCCTGACCACCCAGATGAAGTCTGTGGGTGAAGTCATGGCCATCGGCCGTACCTTCCAGGAATCCCTGCAGAAAGCCCTGCGC GGCCTGGAAGTCGGTGCCTGCGGCCTCGACCCGAAAGTCGACCTGGCCAGCCCGGAAGCTGCCAGCATCCTCAAGCGCGAGCTGACTGTGCCGGGTGCCG AGCGTATCTGGTACGTGGCTGACGCCATGCGTTCCGGCATGACCATCGAGGAAATCTTCGAGCTGACCGGCATCGACCTGTGGTTCCTGGTGCAGATGGA AGACCTCATCAAGGAAGAAGAGAAGGTCAAGACCCTGGCGCTGTCGGCGATCGACAAGGACTATATGCTGCGCCTCAAGCGCAAGGGCTTCTCGGACCAG CGTCTGGCCAAGCTGCTGGGCATCACCGACAAGAACCTGCGCCGTCACCGCCACAAGCTGGAAGTGTTCCCGGTGTACAAGCGCGTCGACACCTGCGCCG CCGAGTTCGCCACCGACACCGCCTACCTGTACTCCACCTACGAGGAAGAGTGCGAGGCCAACCCGTCGACCCGCGACAAGATCATGATCCTGGGTGGTGG CCCGAACCGTATCGGTCAAGGTATCGAGTTCGACTACTGCTGCGTACACGCTGCACTGGCGCTGCGTGAAGACGGTTACGAGACCATCATGGTCAACTGC AACCCGGAAACCGTCTCCACCGACTACGACACCTCCGACCGCCTGTACTTCGAGCCGCTGACCCTGGAAGACGTGCTGGAAGTTTGCCGCGTCGAGAAGC CGAAAGGCGTGATCGTGCACTACGGCGGCCAGACGCCGCTGAAACTGGCCCGTGCCCTGGAAGAAGCCGGCGTACCGATCATCGGTACCAGCCCGGACGC CATCGACCGCGCCGAAGACCGTGAGCGCTTCCAGCAGATGGTTCAGCGCCTGAACCTGCTGCAGCCGCCAAACGCCACCGTACGCAGCGAAGAAGAAGCC ATCAGCGCTGCTGGCAGCATCGGTTACCCGCTGGTGGTGCGCCCGTCGTACGTACTGGGTGGCCGCGCCATGGAAATCGTCTACGAACTGGACGAGCTCA AGCGCTACCTGCGTGAAGCCGTACAGGTGTCCAACGACAGCCCGGTACTGCTCGACCACTTCCTCAACTGCGCCATCGAGATGGACGTGGACGCCGTGTG CGACGGTACCGATGTGGTGATCGGCGCAATCATGCAGCACATCGAGCAGGCCGGCGTTCACTCCGGTGACTCGGCGTGCTCGCTGCCACCTTACTCGCTG AGCAAGGAAGTGCAGGACGAAGTTCGCGTACAGGTCAAGAAAATGGCCCTGGAGCTGGGCGTCGTCGGCCTGATGAACGTGCAGCTGGCCCTGCAAGGCG ACAAGATCTACGTGATCGAAGTCAACCCGCGCGCCTCGCGTACCGTGCCGTTCGTGTCCAAGTGCATCGGCACTTCCCTGGCCATGATCGCCGCCCGCGT GATGGCTGGCAAAACCCTGAAAGAGCTGGGCTTCACCCAGGAAATCATCCCGAACTTCTACAGCGTCAAGGAAGCCGTCTTCCCGTTCGCCAAGTTCCCA GGGGTTGACCCGATCCTCGGCCCTGAGATGAAATCGACCGGTGAAGTCATGGGCGTGGGTGACAGCTTCGGTGAAGCCTTCGCCAAGGCCCAGATGGGTG CCAGCGAAGTGCTGCCGACCGGCGGTACCGCGTTCATCAGCGTGCGTGACGACGACAAGCCACAAGTGGCTGGCGTTGCCCGCGACCTGATCGCCCTGGG CTTCGAAGTGGTTGCAACTGCTGGCACCGCCAAGGTTATCGAAGCGGCTGGCCTGAAAGTGCGCCGTGTGAACAAGGTGACCGAAGGTCGCCCGCACGTG GTCGACATGATCAAGAACGACGAAGTGTCGCTGATCATCAACACCACCGAAGGCCGCCAGTCGATCGCCGATTCCTACTCGATTCGTCGCAATGCGCTGC AGCACAAGATTTACTGCACCACTACCATTGCGGCCGGTGAAGCCATCTGCGAAGCGCTGAAGTTTGGTCCGGAAAAGACCGTTCGTCGCTTGCAAGATCT GCATGCAGGACTGAAAGCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATTACCAAGTACCCGATGACCGTCCAGGGCGCTCGCGCCCTGGAAGAGGAGCACCTGTTCCTGAGCAAGACCGAGCGCCCGCGCCTGAGCCAGGCAAT CGGCGAAGCGCGCGAACTGGGTGACCTCAAGGAAAACGCCGAATACCATGCAGCCCGCGAAGAGCAGGGCATGGTCGAAGCGCGTATCCGCGATATCGAA GGCCGCCTGCAGAACTCGGTGGTGATCGACGTGACCACCATCCCCCACACCGGCAAGGTCATCTTCGGCACCACCGTAGATCTGGAAAACACCGAGACCG GTGACCAGGTGACCTACCAGATCGTTGGCGAGGACGAAGCCGACATCAAGAAGGGCAAGCTCTCGGCCGGCGCGCCGATTGCCCGTGCCATCATCGGCAA GGAAGAAGGTGATATTGTCGTCGTCAAGACGCCTAGTGGCACGGTCGAGTACGAGATTGTCGAAGTCAAGCACATCTGACCGGCGCCTGCGGGCGCCATC
|
|
| Amino Acid Sequence |
>carbamoyl phosphate synthase large subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLPTMGGQTALNCAL DLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGIAHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSP TKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEM NPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELQNDITGGRTPASFEPSIDYVVTKLPRFAFEKFPKADARLTTQMKSVGEVMAIGRTFQESLQKALR GLEVGACGLDPKVDLASPEAASILKRELTVPGAERIWYVADAMRSGMTIEEIFELTGIDLWFLVQMEDLIKEEEKVKTLALSAIDKDYMLRLKRKGFSDQ RLAKLLGITDKNLRRHRHKLEVFPVYKRVDTCAAEFATDTAYLYSTYEEECEANPSTRDKIMILGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNC NPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTPLKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEA ISAAGSIGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDVVIGAIMQHIEQAGVHSGDSACSLPPYSL SKEVQDEVRVQVKKMALELGVVGLMNVQLALQGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKELGFTQEIIPNFYSVKEAVFPFAKFP GVDPILGPEMKSTGEVMGVGDSFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPQVAGVARDLIALGFEVVATAGTAKVIEAAGLKVRRVNKVTEGRPHV VDMIKNDEVSLIINTTEGRQSIADSYSIRRNALQHKIYCTTTIAAGEAICEALKFGPEKTVRRLQDLHAGLKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|