Pseudomonas sp. LAIL14HWK12:I5, F629_RS0112730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGACCGCTGCCGTCGCCAAGGAAGAGACCTTCGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAAGTCATCGCCATGTCCAACGACACCG AGTTCGGCCTGGCTTCGTACTTCTACGCCCGCGACATGAGCCGTGTGTTCCGTGTTGCCGAAGCCCTGGAATACGGCATGGTGGGTATCAACACCGGCCT GATCTCCAACGAAGTCGCGCCATTCGGCGGCATCAAGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATAC CTGTGCATCAGCGTCTGATAGCACGGTAAAGGCTTTACCTCTGCCAGCGGGGCGCGAGAGCGACGTCTCGCTGGCCTTTTTTACATCGCAGTACCTGGTG GCCAGGGCGTTTGCGGCAGTCGATCAACGAATACTGTTCGCGAGCACTCCCAGCCACCCCCGAATAAAAGCGCCATTCCTGTCGGCGCAATGAGGGCATT
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| DNA Sequence for Gene |
>F629_RS0112730
ATGAGCAAGACCAACGAATCCTTGATGCAACGTCGTGTAGCTGCCGTCCCACGTGGCGTCGGTCAAATTCACCCGATCTTCGTCGACACCGCGAAGAACT CGACCGTGATCGACGTTGAAGGCCGCGAACTGATCGACTTCGCCGGCGGCATCGCAGTACTGAACACGGGCCACCTGCACCCGAAAGTGGTTGCAGCCGT GCAAGATCAGCTGACCAAAGTCAGCCACACCTGCTTCCAGGTGCTGGCCTACGAACCCTACGTAGAGCTGTGCGAAAAGATCAACAAGCTGGTACCAGGC GACTTCGACAAGAAGACCCTGCTGGTCACCACCGGCTCCGAAGCCGTTGAAAACGCCGTAAAAATCGCCCGTGCTGCCACTGGTCGCGCTGGTGTCATCG CCTTCACCGGCGGCTACCACGGCCGTACCATGATGACCCTGGGCCTGACCGGCAAGGTTGTGCCGTACTCCGCTGGCATGGGCCTGATGCCAGGCGGCAT CTTCCGCGCCCTGTTCCCGAGCGAACTGCACGGTATCAGCGTTGACGACGCCATCGCCTCGGTCGAGCGCATCTTCAAGAACGATGCCGAGCCACGCGAC ATCGCCGCGATCATCCTCGAGCCAGTACAAGGCGAAGGCGGCTTCCTGCCAGCGCCGAAAGAGCTGATGAAGCGCCTGCGCGAACTGTGCGACAAGCACG GTATCCTGCTGATCGCCGACGAAGTACAGACCGGCGCTGGCCGTACTGGTACCTTCTTCGCCATGGAACAGATGGGCGTTGCGCCTGACCTGACCACCTT CGCCAAGTCCATCGCTGGCGGCTTCCCGCTGGCCGGTGTGTGCGGCAAGGCCGAGTACATGGACGCCATCGCGCCAGGCGGCCTGGGCGGCACCTACGCC GGTTCGCCGATCGCTTGCGCCGCGGCCCTGGCCGTGATCGAAGTGTTCGAAGAAGAGAAACTGCTGGACCGCAGCAAGGCTGTGGGTGAGCGCCTGACCA CTGGCCTGCGCGAAATCCAGAAGAAGTTCCCGATCATCGGCGACGTCCGTGGTCTGGGCTCGATGATTGCTGTCGAAGTCTTCGAGAAAGGCACTCACAC CCCGGACGCTGCTGCTGTTGGCCAGGTTGTTGCCAAGGCACGCGACAAGGGTCTGATCCTGCTGTCCTGCGGCACCTACGGCAACGTCCTGCGTATCCTG GTACCGCTGACTGCTGAAGACGCCCTGCTGGACAAAGGCCTGGCCATCATCGAAGAGTGCTTCGCTGAACTCGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGTGACGCGCTTCAGAAAAAACCCGCCTCGGCGGGTTTTTTTTGTGCCCAGAAAAGCCCTGGGGCGCTATCGTTAGCGGAGGATTTGCTTTGGAAGCTGC GACGGACTGTGTGTCAGGCTAATCAGGAGCTGTTGGCGATGAGCGCTGCAAACCCCACCGCACCACACGTACTGATTGTCGAGGGTGATCCCTGGGTACG TGACATGCTCAGCGAGATGCTGCTCAGCGTGCGTTGTGATGCCCGGCTGCAGGTATGCGCCGACGGCTCGCAGGCACTCAACCTGTTGGCCAACAAGCCT GACCTGATCATCGCCGCCCGCGAGCTGGCCGGTGTCGACGGCCTGGACCTGCTGCGCAAGGTCCGCGCCAAAGGGCCGGGCTTGCCGTTCATCCTCATGA GCAACCGCAGCGACAGCGCCAGTGTGCGCGAGGTGTTGCCTCTGCACCCCACCGCCTACCTGAGCAAACCACTGAACCTGGACAACCTGCGCAAGCGCCT
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNESLMQRRVAAVPRGVGQIHPIFVDTAKNSTVIDVEGRELIDFAGGIAVLNTGHLHPKVVAAVQDQLTKVSHTCFQVLAYEPYVELCEKINKLVPG DFDKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGGYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALFPSELHGISVDDAIASVERIFKNDAEPRD IAAIILEPVQGEGGFLPAPKELMKRLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVAPDLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVIEVFEEEKLLDRSKAVGERLTTGLREIQKKFPIIGDVRGLGSMIAVEVFEKGTHTPDAAAVGQVVAKARDKGLILLSCGTYGNVLRIL VPLTAEDALLDKGLAIIEECFAELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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