Pseudomonas sp. LAIL14HWK12:I5, F629_RS0104175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTACTGGCTGCCCAGTACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATTACCGGTGTGA TCGTGTCGGGTGGCGACAACAACATCTTCACCCAGATCGGTTTGATCGTACTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGATGAACAGGCCAAAGGCCTCGACCCGCTGGCTGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGATCGCCTTCATCATG GGTGTGGTGCCACTGGTGTTCAGCTCCGGTGCAGGTTCCGAAATGCGCCATGCCATGGGTGTGGCAGTGTTCTCGGGGATGATCGGCGTGACCGTGTTCG GCCTGTTCCTGACCCCGGTGTTCTTCTTCCTGATTCGCCGTTTCGTCGAGCGTCGCCAGGCCCGCAAGGCCGAACACGTTCAAGTGCTGGAGAACCATGC
|
|
| DNA Sequence for Gene |
>F629_RS0104175
ATGAACCTGCTCAAACCCCTGACCCCAAGCCTGCTGGCACTGGCCCTTGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCCCCGGCCACCGAACCTGCGC AACTGAACAGCGACGCGCAGGCCAAGGCCTACGACCGTAGCCGCTTCGAAAGCCTGTGGTGGAAGCAGTTCGATGACCCGGTGCTGAACCAGTTGGTGCA GGCCTCGCTTGACGGCAACCGTGATTTGCGCGTGGCCTTCGCCCGTTTGAAATCGGCGCGTTCGATCCGTGAAGACGCCGAGAACGACCAGTTCCCGGTG GTCACCAGCCGCGCCAGCAGCGACATTGGCAAGGGCCAGATCCCCGGCCAGACCACGCAGCGGGTGAACAGCGAGCGCTATGACCTGGGCCTGGACATGG CCTGGGAGCTTGACCTGTTCGGCCGCATCCAGCGCCAGATCGAGGCCAGCGAAGCCCAGGAAGCGGCGGCCGCCGCCGACCTGCAGCAGTTGCAGGTGAG CCTGATCGCCGAGCTGGTCGATGCCTACGGGCAGCTACGCGGTGCCCAGTTGCGCGAGAAGATCGCCCTGGCCAACCTCAAGACCCAGCAAGAATCGCGG ACCATTACCGAAACCCTGCGCGATGCCGGTGTGGGCAACGACCTGGACGTGGTGCGTGCCGATGCACGCCTGGCCGGGGTCGAGGCCACTGTGCCGCAAC TGCAGGCTGAACAGGCTCGGGCGCGTCATCGCATTGCCACCCTGCTCGGCCAGCGCCCAGAGGCACTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGC CATCGCCAAGGCGTTGCCGGTAGGCGATCCGGGCGAACTGCTGCGCCGCCGCCCGGATATCCGCAGCGCCGAACGCCAACTGGCGGCCGCCACCGCCAAC GTAGGCGTAGCCACGGCAGACCTGTTCCCCCGCGTCAGCCTCAGCGGCTTCCTGGGCTTTACCGCCGCGCGTGGCTCGCAGATAGGCTCCTCGGCCGCCA ATGCCTGGGCACTGGGCCCAAGCATTACCTGGGCGGCCTTCGACCTGGGCAGCGTGCGGGCCCGCCTGCGCGGCGCCAAGGCCGATGCCGAAGGGGCGCT GGCCAATTACGAGCAGCAGGTATTGCTGGCTCTGGAAGAGTCGGCCAATGCCTTCAGCGATTACGACAAGACCCAGCAGCGGCTGCTGTCGTTGATGCGC CAGAGCGACGCCAGCCGCAAGGCGGCAGAGCTGGCCTCGATCCGCTATCGCGAGGGTACGGTCGACTACTTGGTGCTGCTGGATGCCGAGCGTGAGCGGT TGAGCGCAGAAGATGCGCAGGCTCAGGGCGAAGTCGAGCTGTACCGCGGCATTGTCTCGATCTACAAGGCCCTGGGCGGCGGCTGGCAACCGGAGACTGT GGCCAGCGCACACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACCCCCCCGTTTCAACGACTCCGTTGGTTGGTTCCTCCCCCAACCGTTTGCCCCGCTGGCCCTGGTCTGCGGGGCTTTTTTATCGTGGATAAGCATTGG CGACGTTTTGCCGCCAAACTACAAGGGCTCGGTTGCATTTACCCCCCACCTGGCCCAAGCTCTGCCCTTCCCCCGCCACGGATCGTCCGATGCCCAGACG CAACCGCTACCTGATCGCCTTGCTGTTGTTGATCCTGGTATCGGCCCTGTTCGGCTACCTGTGGCGCGACACCCCGCCAGCCGCACCGACCCTGCCGGCA CACAGCTACGCCAAGGCCCTGCGCCAGGCCCACGAAGGCCAGCCCGGTGCGGCACGGGTGCTGTATCAGCAATTGCAACGTAACGACTTGCCCGCCATCC GGCGTGCGGCCCTGTACGCCGAGTTGCCCAACTACCCCTCGCCACTGGCATTGAAGCTCGCCCGCCAGGACCTGGAGCATGCCGACCCACTGGTGCGCCG
|
|
| Amino Acid Sequence |
>RND transporter
MNLLKPLTPSLLALALAACAVGPDYQAPATEPAQLNSDAQAKAYDRSRFESLWWKQFDDPVLNQLVQASLDGNRDLRVAFARLKSARSIREDAENDQFPV VTSRASSDIGKGQIPGQTTQRVNSERYDLGLDMAWELDLFGRIQRQIEASEAQEAAAAADLQQLQVSLIAELVDAYGQLRGAQLREKIALANLKTQQESR TITETLRDAGVGNDLDVVRADARLAGVEATVPQLQAEQARARHRIATLLGQRPEALSVDLSPKALPAIAKALPVGDPGELLRRRPDIRSAERQLAAATAN VGVATADLFPRVSLSGFLGFTAARGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGAKADAEGALANYEQQVLLALEESANAFSDYDKTQQRLLSLMR QSDASRKAAELASIRYREGTVDYLVLLDAERERLSAEDAQAQGEVELYRGIVSIYKALGGGWQPETVASAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|