Pseudomonas sp. LAIL14HWK12:I5, F629_RS0102540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCGACCGACAAAGACGGGCTGATCCCGGCCTTGCTGGCTGCCGAGATGACCGCCCGCACCGGTCGTAACCCGAGCCAGGCCTACGCGGACCTGACCGA AGCCTTGGGCAAACCGTACGCTACCCGGGTCGAAGCCAAGGCCGATGCGCGGCAGAAAGCGCTGCTGAGCAAGCTGGCGCCGGAGCAGGTCAAGTCGACC GAACTGGCCGGTGAGCCTATCGTGCAGATCCTCAGCCACGCGCCGGGCAATGGCCAGGCGATTGGCGGGCTGAAGGTGATGACCGCCAACGGATGGTTCG CCGCACGGCCGTCGGGCACCGAGGACATCTACAAGATCTACGCCGAAAGCTTCATCGACGAGGCGCACCTGCAGCGCCTGGTGCAGGAAGCGCAGGTGCT GGTGGATGCAGCGATTGCCTGACCGGTAACAAACCGCTTGGCCCTGCGCCGCAACGTAAATTAGAATTAATCCTATTTACGCCGCCGCAGGGCCATCCTC
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| DNA Sequence for Gene |
>F629_RS0102540
ATGATCGACGCCGCGCCGCCAACGGAACCTAGCCTGCCTGCCCTGTACCGGGAGCACCGCAGCTGGCTCGAAACCTGGCTACGCCGGCGCCTGGGCAATG CCTGGGATGCCGCCGATCTCAGCCAGGATACTTTTCTGCGGGTACTGACCAGTGCCCAACCATTGGCAGACATACGTGAGCCAAGGGCCTACCTGCTGAC AGTCGGCAAGCGCCTGCTGAGCAACTTCCACCAGCGACGTAGCCTGGAACAGGCTTATCTCGATGCTTTGGCCACCTTGCCCGAGCAGCATGTGCCCTCG CCAGAAAAACGCTGGATATTGCTGGAAACCCTGCAAGTACTCGACGAATTGCTCGATGGCCTGAAGGCACCAGTGCGCAAGGCCTTTCTCTGGAGCCAGC TCGAAGGTGTGGGTTACGCCGAAATCGGCAAGCGCCTGGGCGTTTGCGAGCGCTCGGTGAAACGCTACATGGCGCAGGCTTACGAACATTGCCTGCTGGC CGAATTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCCCATTCCCCCGAAATCCGCGAAGCTGTGCGTGCTGCCGCCCGCTGGCTGGCGCTGCTGGATTCTGGCGACGCCAGTGAGGGCGACTTGCTGCGCCT GGCGCAATGGCGGGCCAGCAGCAGCTTGCATGAAGACGCCTGGCAAAAGGCATCATTGTTGCGTCAGCGCTTTACCGCTTTACCCGGCGCTTTGGCCATG GCAACTCTGGACCGCCCGGACGCCGGCCGACGCGCACTGCTCAAGCAAGCCTTGGCTATCGCCGCGCTGTTGCCGACAGCCTGGCTGGTCAGCCGTGAGC TGCCTCTGGATGCCTGGACTGCCGACATGCACACCTCGGTAGGCGAACGTCGGCAGGTGCTGTTGAGCGATGGCACATTCGTGCAGATGAACACCGACAG TGCGGTGGATATCGACATGAATGCACGCCGCCTGACGTTGCTTCGCGGCGAAGTGGCAGTGAAGGTGCCCGCCAACCTGAACCTGACGTTGCAGGTGCCT
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| Amino Acid Sequence |
>RNA polymerase sigma factor
MIDAAPPTEPSLPALYREHRSWLETWLRRRLGNAWDAADLSQDTFLRVLTSAQPLADIREPRAYLLTVGKRLLSNFHQRRSLEQAYLDALATLPEQHVPS PEKRWILLETLQVLDELLDGLKAPVRKAFLWSQLEGVGYAEIGKRLGVCERSVKRYMAQAYEHCLLAELQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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