Pseudomonas thermotolerans J53, M905_RS0113870

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas thermotolerans J53 PsesuJ47DRAFT_scaffold_26.27_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGCGATCGGGGCTTGTAATTTCTTTTTTGAATAAAAGAACAATTAAAGATAATTTTTCAAGATAAGCAGAAGCCTCCATGATAGCGCCATGCCGGGCTCC ACCCCAGCGCAAGCGACTGCCTGCGCGCTGGAGTTCCCCGGTAGGCAGCATCATCGGAGGTTTTCGGTCGCCACCTTTCAGGCAGGGAGGGGCGACCTTT TTTATTTCCGTCATCCAGCGCCGAGCGGCGCACCGGATTGCCCATCCCGCGCCCATTCTCAGCAACGCACGCCCCTGTCGGGATCGTCCCGGTGGGGCGT GTGCGTATGGGGGCGGCGACCGGCAGCGCTGCCCGGCAGGCAACAGCGAACGGGCAGTTTGTCCGGCTCGACAGCGGGGCGATTGTCGAGGTGCTTCGAT AACTTGTTGAATATAAAGGACTTTATCGTCTGGCGCGGTTGTTGAGATGGGGCGCCGGCACCTTCGGGTGCTGGATGTCACGACTCTCACAGGAACCGCC
DNA Sequence for Gene
>M905_RS0113870
ATGCACCTTCACGACAAATCCCTCGCTGTCCTACCTCTCGCCCTGAGTCTGGTCCTGCCGGCCCTCGCGGCCGCCGACGGGAGCTTTCTCGACGACAGCA GCTTCCGACTGACCAACCGCAACTTCTACTTCAACCAGGACTACCGCAACGGCGACTTCGCCCTGAATCCGCACAACGGCGAGCGGCAGAGCCGGCGCAC CGAGTGGGGCCACGGCATCATCGCCGACTTCCAGTCCGGCTATACCGACGGAACGCTCGGCTTCGGCGTCGACCTGCTGGGCCTGGTCGGCCTCAAGCTG GACGGCGGCAACGGCCGGGTGGGTAACGGCGTCGGCGTACCGGGCATCGTCTCCCGCGCCGGGGAGAACTTCGACGGCGAGCCCAAGGACGAGTACGGCA AGCTCGGCGGCGCGCTGAAGCTGCGCCTCTTCGACGACACCGAAGTGCGTTACGGCGACGTGCGCCCTACCAGCCCGGTGCTGCACGCCAGCGATATCCG CCTGCTGCCGCAGACCCTCCGCGGCCTGGTGTTCGACAACCGCTCCCTGCCGGGCCTGCATCTGCAGGGCGGCAAGCTGGAATCCAGCAGCGACCGCAAT GCCAGCAGCCACCGCGGCGACCTCGGCACCGTCTACGCCGGGCGCTTCAAGGAAGCCGACGCGGTCCTCTACCTGGGCAGCGACTACCGCTTCAACGATC AGCTGAGCTTCAAGCTGCACACCAGCAAGCTGGACGACATCTGGACCCAGTCGTTCTTCCGCGTCGACTTCAGCCAGCCGCTGGCTGAGGGCCTGAGCCT CAACACCGGCCTCAACTGGTACCGCACCCGCGACACCGGCAAGGCGCTGGTTGGCGAGATCGACAACGACTCCTGGAGCGCCCGCCTCGGCCTCAAGGCC GGCGCCCACGCCGTCACCCTGGCCTACACGCGCATCGACGGCGATACCCCCTTCGACTATGTGTGGAACACCTACGACCTGGAGCTGGACAGCGCCTCCC AGGTGTCCGACTTCAACAACCCCAACGAGCGCTCCTGGCAGCTGCGCTACGACTACGACTTCGCCGCCCTGGGCGTGCCCGGCCTTAGTCTCACCGCCCG CTACGTGCGCGGCAGCGACATCGACGGACGCAACGCCGGCCCGGCCTACGGCTACTTCACCGGCATCGAGGACGGCAAGCACTGGGAGCGCAACCTGTGG CTCAGCTACGTGCTGCAGGACGGCCCGGCCAAGGGGCTGTCCTTCAATCTGCTGCAGGCCACCCACCGGGTCGGCGGCGACCATATCGCCGAGGCCAACG TCGACGAGTTGCGCTTCATCGTCCAGTACCCGCTGCAGGTGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCGCTCCGTCGCGTTGTTTCCGGGCGGACAGCGGTTCAACAGGCTGCCGCCCGGGCTACACCGAGGCTTTCCTTGTTTTTGTATAAGTCTTTAAAAATT AAAGATTTTTTATCTGGCATGGATCCTGTAATGGCACTGCCAGGCGCGCCGCAGCAGGCGGCGCAGAGTTTCATCGAAGGAGGTTGCAGCCATGTCGCGG GAAATCCGCCTGAATGCGTTCGAGATGAATTGCGTCGGTCACCAGTCGCCGGGTCTCTGGGCCCATCCGCGTGACCGTGCCTGGCAGTACAAGGATCTGG AATACTGGACCGAGCTGGCCAAGCTGCTCGAGCGCGGCCGTTTCGACGGCATCTTCATCGCCGACGTGATCGGCATCTACGACGTGCTCAACGGCAATGG CGAGGCGGCCATCCGTCAGTCCACCCAGGTACCGGTCAACGATCCGCTGGCGCTGATCACTCCCATGGCGCTGGTCACCGAGCACCTCGGCTTCGGTCTG
Amino Acid Sequence
>porin
MHLHDKSLAVLPLALSLVLPALAAADGSFLDDSSFRLTNRNFYFNQDYRNGDFALNPHNGERQSRRTEWGHGIIADFQSGYTDGTLGFGVDLLGLVGLKL DGGNGRVGNGVGVPGIVSRAGENFDGEPKDEYGKLGGALKLRLFDDTEVRYGDVRPTSPVLHASDIRLLPQTLRGLVFDNRSLPGLHLQGGKLESSSDRN ASSHRGDLGTVYAGRFKEADAVLYLGSDYRFNDQLSFKLHTSKLDDIWTQSFFRVDFSQPLAEGLSLNTGLNWYRTRDTGKALVGEIDNDSWSARLGLKA GAHAVTLAYTRIDGDTPFDYVWNTYDLELDSASQVSDFNNPNERSWQLRYDYDFAALGVPGLSLTARYVRGSDIDGRNAGPAYGYFTGIEDGKHWERNLW LSYVLQDGPAKGLSFNLLQATHRVGGDHIAEANVDELRFIVQYPLQVF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site