Pseudomonas thermotolerans J53, M905_RS0111145 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas thermotolerans J53 PsesuJ47DRAFT_scaffold_18.19_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCGAAAGGCGCATGCAGCGCTGCGCGATACTGCCAGGCCAGCCCCAGACCGGCGCCGTAGAGCACCAGCACCACCCAGTGCATCACCTGGCGGGCGC GCTGGCCAAGCGCCCGGGACAACTGCTCGCGCGGCCCCGTCTCCAATTGTCGCGCCGCGTGGCTGAGGATCATCACCTCGAAGAACACCCCGCCGATGAA GAAGGCGGCGGCACTGATATGCAGGAACTTCAGCAGCAGATAGGTCATCTTCCCTCCTTGTCGTTTCCCATTGTGCCGGCCTGCCCGCCATCGACCATGA CCGGTGTCAAGAAGGGCGTCACAGCGCCGCCGGACAATCCACCCCGCAAGCGCCTCCCAGGCTTTTGGCCGCCTACACTTGGCACGGCTTCAGGCCCCGC CGGAAGCTGCCGAGCCGGCTCTGGTCAAGGCTCGGGACGGTCGCTAAAATCGCGCGTTTTTTGATCAAGGCGCCTCGTGAGCGCCCAGAGGTTAGCCAGC
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| DNA Sequence for Gene |
>M905_RS0111145
|rimO
ATGTCCACCCCCGCCACGCCGAAAGTCGGATTTGTCAGTCTCGGTTGCCCGAAAGCTTTGGTCGATTCCGAACGAATCCTGACCCAGCTACGCATGGAGG GCTACGAGGTGGTCGGCACCTACCAGGACGCCGACGTGGTGGTGGTCAATACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGG CGAGGCCATCGCCGAGAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTGGACGAGAACAACATCCGCGGCGTGCACCCCAGCGTGCTGGCGGTCACC GGCCCGCAGCAGTACGAGCAGGTGGTCAGCGCGGTGCACGAGGTGGTGCCGCCGAAGGCCGAGCACAACCCACTGATCGACCTGGTGCCGCCACAGGGCG TCAAGCTCACCCCTCGCCACTACGCCTACCTGAAGATTTCCGAGGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCCTCGATGCGCGGCAAGCTGGT CAGCCGTCCGGTCGGCGAGGTGCTCGGCGAGGCCGAGCGACTGGTCAAGGCCGGCGTCAAGGAACTGCTGGTGATCAGCCAGGACACCAGCGCCTACGGC GTCGACCTCAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGAAGGAGCTCTGCGAGGCGCTCTCCGGCCTGGGCGCCTGGGTCC GTCTGCACTACGTCTACCCCTACCCGAACGTCGACGACGTCATCCCGCTGATGGCCGAGGGCAAGATCCTGCCCTACCTGGACATCCCCTTCCAGCACGC CAGCCCCAAAGTGCTCAAAGCCATGAAGCGACCGGCCTTCGAGGACCAGACCCTGGCGCGCATCAAGCGCTGGCGCGAACTCTGCCCGGAGCTGACCATC CGCTCCACCTTCATCGTCGGCTTCCCCGGCGAGACCGAAGAGGACTTCCTCTACCTGCTGGACTGGCTGAGTGAAGCCCAGCTGGACCGCGTCGGCTGCT TCCAGTACTCCCCGGTGGAGGGCGCGCCGGCCAACGACCTGGGCCTGCCGCAGGTGCCGGACGACGTCAAGCAGGAGCGCTGGGAGCGCTTCATGGCCCA CCAACAAGCGATCTCCGCCGCGCGCCTGCAGCGCAAGATCGGCAAGGAGATCGAGGTGCTGATCGACGAGGTGGACGAACAGGGCGCGGTGGCCCGCTCC TGGGCCGACGCCCCGGAGATCGACGGCAGCGTGTTCGTCGACAGCACCACGGTGAAGCCCGGCGACAAAATCCGCGTGCGGGTCACCGACGCCGACGAGT ACGACCTCTGGGCCGAGCCGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGACGCCCCCAAAGGAAGCCCCGCCACTGCGGGGCTTTTTTATGCACGGTCGAATGAGCATCCAAGCCGAAACCTTGCCGCGCATGTCTAGAAGGCTGC TTTCCACACAGCCACCAGGCCGCGGCAGACCGCACGCTTTGCTTATGCCCAATCCGCGCCGTTGTGGCGGGATGGCTTACCAGGGGTCACGCTCGCTAAC ATGCGCGGACCTCCCTGCACGTGTGCCGTTATGCCTTTCTCTGTTACCCCCATCGGCTTCGTTCGCTCCTGCTTCAAGGAGAAGTTCGCCATCCCCCGCC AGCCGCGCCTGGCCCCGGCCGCCCGCGGCGTGTTGGAGCTGCTGGCGCCCTTCGACCGCGCCGAGGCGGTAGCCGGGCTGGAGCAGGTCAGCCACGTCTG GCTGCTATTCCTGTTCCACCAGGCGCTGGAGGACAAGCCGCGCCTCAAGGTGCGCCCGCCGCGCCTGGGCGGCAACCGCCAGCTGGGGGTGTTCGCCACC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVGTYQDADVVVVNTCGFIDSAKAESLEVIGEAIAENGKVIVTGCMGVDENNIRGVHPSVLAVT GPQQYEQVVSAVHEVVPPKAEHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLGEAERLVKAGVKELLVISQDTSAYG VDLKYKTDFWNGQPVKTRMKELCEALSGLGAWVRLHYVYPYPNVDDVIPLMAEGKILPYLDIPFQHASPKVLKAMKRPAFEDQTLARIKRWRELCPELTI RSTFIVGFPGETEEDFLYLLDWLSEAQLDRVGCFQYSPVEGAPANDLGLPQVPDDVKQERWERFMAHQQAISAARLQRKIGKEIEVLIDEVDEQGAVARS WADAPEIDGSVFVDSTTVKPGDKIRVRVTDADEYDLWAEPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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