Pseudomonas thermotolerans J53, M905_RS0105175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas thermotolerans J53 PsesuJ47DRAFT_scaffold_6.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCAGCGCCGGATCGCGCTCGATGCCCAGGCCCTGCAGGAGGATCTGGCCGAGCATCACCTGCGCCTCCAGTTCGCCCCCCTTGGCGGCGGCGAGGATG ACCCGCGCCCGCTCGCGCGGCTCACCGTTGAGTAGCTCGGGCAGTTCTTCGAGGGAGACGCTCAGCTCGCTCCTGAGGGTAGCCGACATGCTCGATCAGA CCTCCTCCAGGGATGCAGTGGTGGTGTTTGGGGACTTGCCCGGTGGCAAGCCGGCTACGGCCCGTCCAGCCCGTTCCGCAGGGTGCGCAAGTCCTTCCGC GAGACATCCGGAACTGGCTGAGGGGGCTGGGGAAACGCGCTGGTATCTGGGCGCGCCATTATAGAGGCTGGCCGGTGGAGCAGGATCCCGAGTTCGTAAA CGAATCGAAAATGTTTGCGGATGAGAATCAGTGTTGATTGAAGGTGCTTGTTATTTGGCATAGATTGCGCGCCGTTCGATCAACTCGATGGGAAGTAACG
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| DNA Sequence for Gene |
>M905_RS0105175
ATGTCCACCAAGTTCCAGGAGCGTGCTGCTTCGGCGCCTTCTCTTCTTGCCACCGCAGTAGGTATCGCCATTACCGGCCTGTCCGCCAGCCAGCTGGTCC AGGCAGAGGAAGCCGACCAGCAGGACGCCGTGGTGCTGGATGCCACCGAGGTGCAGAGCGTTGCGGATGCCGACGGTTACAAGACCGAGTCCGCCTCAAA GAAATACACCGCACCGCTGCGGGAAACGCCGAAGAGTGTGACCGTGATTCCCGAGGCGGTGATCAAGGACACCGGCTCACTGTCGCTGGCCGACGCTCTG CGCACCACTTCCGGCATCACCTTCGGCGCCGGCGAAGGCGGCAACCCGGCGGGCGACCGGCCGATCATCCGCGGCTTCAACGCGGAAAGCGACGTATTCA TCGATGGCGTGCGCGACGTCGGCATGCAGACCCGCGAAGTGTTCAACCTAGAGCAGGTAGAAGTCTCCAAGGGCCCGGGCTCGGCCTTCACCGGTGCCGG CTCCACCGGCGGCAGCCTGAACCTGATCAGCAAGACCGCCAAGCGTGACAACTTCCTGGACATCAGCCAGACCTTCGGCACCGACCAGACCCGCCGCACC ACCCTGGACGGCAACTACCAGTTCAGCGAGCAGATCGCCGGCCGCCTGAACCTGATGAAGCACGATGCCCACGTGGCTGGCCGCGACGCCGTGAGCGTCA GCCGCTGGGGCGTGGCGCCGACCATCACCTTCGGCTTCGCTACCCCGACTCGCGCCACCCTGTCCTACTACCACCTGGAAACGGATGACATGCCCGATTA CGGCATTCCGCTGATGACCGCGGGCATGGCCGGCGACGGCAAGCGTAAGCCGGTTTCCGTCGATCGTGACAGCTTCTACGGCCTGCAGTCGCGCGACTAC CGCAAGAGCACCACCGACAGCGGCACCTTCGCCTTCGAGCACGACCTCAACGAGAGCCTGACTCTGTCCAACACCACCCGGGTGACCCGTACCACCCTGG ACTACATCGCCACCAACCCGGATGACAGCGCCGGCAACGTGGCCAACGGCAATGTGTTCCGCTCTTCCAAGAGTCGCAACTCCACCTCGGAAGGCTGGGT CAACCAGACCAACCTGCAGGCCAACTTCACCACCGGCAGCATCGAGCACAGCCTGATCACCGGGGTGGAAATCAGCCGCCTGGGCGTGCACAACCGCTCC TACTACATCACCTCCGGCCCGGGCGCCGCTACCCGTCCGTGTAACGCGGCGGCGTTCGCCAGCGGCGACTGCACCAGCCTGCGGAATCCCACCTACAAGG ATCGCTGGCAGGGCAGCGTGGTCGACAGCAACGCCTTCACCGACACCGACACCGATACCCTGTCTGGCTTCGTGTTCGACACCCTGAAGTTCAACGACCA GTGGTCGCTGAACCTGGGGGTGCGCTACGACGACTACGAAACCACCTCCCAGGGCCCGACCGTTCCCCGTGGTTCCAACGAGGTCACCGGTTACAACGAT CTGGAGTCCAAGACCCACTTCTGGAACTACCAGGCCGGTCTGGTCTACAACCCGCTGCCCAACGGCAGCGTCTATCTGGCCTGGTCGACCTCCAGCAACC CGTCCGGCGAAACCGGGGGCGATGGTGGCGACAACCTGTCGGCCACCAACGCGATCCTGGATCCGGAACGCAACCGCAACGTCGAGCTGGGCACCAAGTG GGACTTCTTCGACGAGCGTCTGGGCCTGCAGGCCGCGCTGTTCAAGACCACCAAGAAGAATGCCCGGGTCAACGACATCAATGGCATCCCGGAGAACATC GGCGAAACCGAGATCAAGGGCTTCGAGATCGGCGTCAATGGTCAGCTGACTGCGAACTGGAACATGTTTGCCAGCTACACCTACCTCGACAGCGAGCTCG TCAAGGGCGCGCAGGATGCCAATCCCAGCAACGACGGGAACCGGGTGCAGAGCACTCCGGAAAACTCCTTCAGCTTCTGGACCACTTACAACCTGACCGA TGCCCTGACCGTCGGCGCCGGCGCCAACTACGTCGACTCGCGCTTCGGCGATGCGGCCAACACCATCGAGGTGCCGTCCTACTGGCGCTACGACGCGATG GCCAAGTATGTGGTCAACAAGAACCTGGACTTCCAGCTGAACGTCCAGAACCTGACCGACAAGCGCTACTTCGACCAGGTCTACTCGGCCCACATGGCCC ATGTGGCCCCGGGCCGTACCGCCCTGCTGAGCACCAACTTCCACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCTGCATGATGCGCCAACCCCGCTCGGGCGACCGGGCGGGGTTTTTCATTTCACGGAGTGGCGAAAGGTAAGGAATGGGTAAAACCGGCTGCATGCGA GCGTTTCCCATTTACAATACGACGCCTCCGAATATGTGCGGGACTTCAGCGTGTTCAAGAAAATCATCTTTCAGTTGCACTGGTTCTTCGGCATCAGCGC CGGGCTGGTGCTGGCGATCATGGGCGTCAGCGGGGCGCTGTACAGCTTCCAGGCGGAGATCCTGCAGGCCCTGAATCCCGAGGTGCTGCGGGTCGAGCCG GCCGGGCAGGCACGTCTGAGCCTCGACCAGCTGATCGAGCGGATCGAGGCGGCCAAGGGCTCGCAGGTGGCCGGCCTGAGTCTCAGCGAGGCGCCCAACG AGCCGGCACGGGCCAACATGCTGCCGGCGCCCGGGCAGCGCCGCGGCGAGATGGTGCTGGTCGATCCCTATAGCGGCGAGCTGCTCGGCGAGCCGAAGGG
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| Amino Acid Sequence |
>ligand-gated channel protein
MSTKFQERAASAPSLLATAVGIAITGLSASQLVQAEEADQQDAVVLDATEVQSVADADGYKTESASKKYTAPLRETPKSVTVIPEAVIKDTGSLSLADAL RTTSGITFGAGEGGNPAGDRPIIRGFNAESDVFIDGVRDVGMQTREVFNLEQVEVSKGPGSAFTGAGSTGGSLNLISKTAKRDNFLDISQTFGTDQTRRT TLDGNYQFSEQIAGRLNLMKHDAHVAGRDAVSVSRWGVAPTITFGFATPTRATLSYYHLETDDMPDYGIPLMTAGMAGDGKRKPVSVDRDSFYGLQSRDY RKSTTDSGTFAFEHDLNESLTLSNTTRVTRTTLDYIATNPDDSAGNVANGNVFRSSKSRNSTSEGWVNQTNLQANFTTGSIEHSLITGVEISRLGVHNRS YYITSGPGAATRPCNAAAFASGDCTSLRNPTYKDRWQGSVVDSNAFTDTDTDTLSGFVFDTLKFNDQWSLNLGVRYDDYETTSQGPTVPRGSNEVTGYND LESKTHFWNYQAGLVYNPLPNGSVYLAWSTSSNPSGETGGDGGDNLSATNAILDPERNRNVELGTKWDFFDERLGLQAALFKTTKKNARVNDINGIPENI GETEIKGFEIGVNGQLTANWNMFASYTYLDSELVKGAQDANPSNDGNRVQSTPENSFSFWTTYNLTDALTVGAGANYVDSRFGDAANTIEVPSYWRYDAM AKYVVNKNLDFQLNVQNLTDKRYFDQVYSAHMAHVAPGRTALLSTNFHF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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