Pseudomonas sp. URIL14HWK12:I6, H043_RS0126100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00035.35_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACTGCCTGCGCGAAGTGTTCGGCAACCACCCGCTGGTGGGTGAGGTTCAGGGCGTCGGGCTGGTGGCGGCATTGCAGTTCGCCGAAGACAAAGCCACC CGCAAGCGTTTCGCCAACGAGAACGACATCGCCTGGCGCTGCCGCACCATTGGTTTTGAGGAAGGCCTGATCATTCGATCGACGCTGGGCCGGATGATCA TGGCCCCCGCATTGATCGCCACGCGCGCGGAGCTGGATGAATTGGTCGACAAAACACGAATCGCCGTGGATCGCACGGCTCGCGAATACGGCGTGCTGTA ACGCATACCCCTTGTAGGAGTGAGCCTGCTCGCGATAGCGGTGTGTCATTAACATCGATCTAAACTGATCGACCGCTATCGCGAGCAGGCTCACTCCTAC AAGGGAATCAGGTATGCCTTGAACTCAGCACATCGGCTCAATCCGGCACGGATGATCGTGCCCATCATCAGAGACCTTCCCTGATTGTCGGTCCCTCACG
|
|
| DNA Sequence for Gene |
>H043_RS0126100
ATGGCTCCCTCAACACCACGCTTTGCGTTGTTGGCACTGCTTTGCGCAGCGAGCGACAGTGCTTTGGCCAATGACTTCTTCGACGACGCCAAAACCGAAG TGCTCAGCCGCAACTTCTTCCTGAGCAACGACTACCGCTCGCCCTCTCCCTCCGGCAAAAACTATAAACAGGAATGGGCCCAGGGCTTTATCGGCACGTT CACCTCTGGCTACACGCCAGGCACTGTCGGATTCGGCATCGATGCCCACGCCTTTCTCGGCCTGAAACTCGATGGCGGCAAAGGACATTCCGGCACGGGT CTGTTGCCGGTCGACAGCAATGGTCGCAGTGAACCGAACTACTCCAGCGCTGGCGGCGCGTTCAAACTGAAAGTTTCGCGCACCACCCTCGCGTTCGGCG AGATGACCGTGGAAACGCCGGTGTTCGACACCTCGGACAAACGCCTGCAACCGGAATACGCCACAGGTTTGCTAGTGAACAGTCGTGAAATCGACAACGT TAACTTCACGGCCGGACACTTCACCGCATTCAAGAATCAGGACAGCTCCTCAGGGCGCGGCGACTTTTATGGTTACGGCGCCAACACCGAAGCCGGCGGA ATCAGTTTTCTAGGCGTGGACCTGTTCGGCGACAGTCCGGTCGGTGGATCGCTTTACGCCTCGGACCTGAGCGACACCTGGCATCAGTACTACGCCAATC TGCACTTCAAACAGTCCGGCCTGTTGCTCGATGCCAACCTCTACCACACCCGCGATACCGGTCGGGCGCTGGCCGGCGCGATCGACAACACCGCGTTCAG CCTGTCCGGCAAGTACAGTTTCGGCGCGCACGCGGTCATGCTCGGCTGGCAACGCATAAATGGCGACACGCCGTTCGATTTCGTGGGCGGTGACTCGATC TACCTCGCCAACTCGATCAAATACGCCGACTTCAACGGCGCCGGCGAACGCTCCTGGCAAGCACGCTACGACCTCGACCTTGGCGCTTTCGGCATCCCTG GCCTGACCTTCATGACCCGCTACGTCTCCGGCGACCACATCGACGGCACTCACGCGCCCAAGGGCGGCGCGTACAACCCGTTCGATGCCGAGACTGGCGA CTATCAGCCGCAGCAAGGCGCTGGCGGCAAGCATTGGGAACGGGATATCGATCTGAAATACATCGTGCAATCGGGCACGGCGAAGGACCTGTCGGTGCAG CTGTCGCATGTCTCGCACCGGGCCAACGAGGCACAGGCCGGGGATGATATCGACCGGATTTATTTAGTGATTCAGTACCCGTTGGGGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGCTGGTGGTTAAACCCAGCCTCTGGCCCGATGTCGCCCTACGAATCCATCGACTGGAAAAACTCCGCGAAGCCGCCGACAACGAAACCCTGCTGGTAC GCGCCAGCCTGCCCCCCCCTGTGGGAGCGAGCCTGCTCGCGAAAGCGGCCGATCAGTCGGCATAGACGTTGAATGACGTACCGCATTCGCGAGCAGGCTC GCTCCCACAGGGGATTCAGTGCGTCATGGATGCTGCGGTAATCGGCGGAAGGCAGCCGGAGTCGAACCTGCCCGGGAACGGATGCCGTCCCCAACCGGGT TTGAAGCCCGGCCGCGCCACCGGGCGCGATTGCCTTCCTTTGAACTCAGGGTGCGTCGGC
|
|
| Amino Acid Sequence |
>membrane protein
MAPSTPRFALLALLCAASDSALANDFFDDAKTEVLSRNFFLSNDYRSPSPSGKNYKQEWAQGFIGTFTSGYTPGTVGFGIDAHAFLGLKLDGGKGHSGTG LLPVDSNGRSEPNYSSAGGAFKLKVSRTTLAFGEMTVETPVFDTSDKRLQPEYATGLLVNSREIDNVNFTAGHFTAFKNQDSSSGRGDFYGYGANTEAGG ISFLGVDLFGDSPVGGSLYASDLSDTWHQYYANLHFKQSGLLLDANLYHTRDTGRALAGAIDNTAFSLSGKYSFGAHAVMLGWQRINGDTPFDFVGGDSI YLANSIKYADFNGAGERSWQARYDLDLGAFGIPGLTFMTRYVSGDHIDGTHAPKGGAYNPFDAETGDYQPQQGAGGKHWERDIDLKYIVQSGTAKDLSVQ LSHVSHRANEAQAGDDIDRIYLVIQYPLGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|