Pseudomonas sp. URIL14HWK12:I6, H043_RS0120790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00016.16_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATAGTAGGCACCATTGGCGAAAATGCTCAAGGTGCGCTCGTCATCATGCTCGTTGAACGGGTGACTCCGATGGGCGTAGTGGCAGGCGCGGGGACGATC TTCCCCAGGCACTCGCCTGAACATTGCCGGATGTCGAGACTTAAGACGCAGCCTCTTCTTTAAAGTCACCTCAAGAGCGACAAAGATATGTGAGGTGTCA TGCAAAATCGGAACAAAAGTGTAGACGAACTCATCTAGGCAGACTTGGTGCAAGACGCAGAAACAGCACCGGACAACGGGAACTTTTTCTCATTAACACG CTCAGGCCGGGGCCTGCAGCTGGATATTTTTTATACAGCCCGGTTAAAAGTTGCTCGAAAAAGAATCAACGCCTACAATTTTTTTTGCTTCTTGCGCTCC GTCAGTTTACTTACTACAAGTAATGGGTAGTATGTACGCCGGCTATTTCCTCAATCGGAGGAGAAAGCCACTTAATTGAAAGTCCTTGAAGGGGAACACG
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| DNA Sequence for Gene |
>H043_RS0120790
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGCATCGAAAGAAACCGAAGCACGTCTGACCGCTA CTGAAGACGCAGCTGCTCGCGCTCAAGCTCGTGCAGACGAAGCATACCGTAAAGCTGATGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA CGAAGCTAACGAGCGTGCTCTGCGTATGCTGGACAAAGCTAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATCCCTCGGGATTGTTATCAAGCCGACCCATTTTTTGGGTCGGCTTTTTTATTGCCGGTACTTTCCCCCGGGCAATAAAAAACCCGCCGACGCTGCAC GCGCCTGCGGGTTTTGATCGACTTACTGCTGCAGGTCGATCGGGGTGTTCGAGACCATCGGCGCCGAGGTATTCGGTGTGCCGATTTCAGTTGGCAGGCC ATCTTCGGCCGCTACCACATCACGCACGACATCCCAGTTCACGCGCAGGTTGTTGGTGACATCTTCGCGCTTGAGCATCGCATTGATCACTGCAGTGTGC TTGTCGACCACTGACGGGTTGCCCTTGTCATCGATGGGTGTGTGCGCTTCCAGATAGACCTTGCCGCCACTGCTGCCGAACTTGTAGGCATCGTTGAGAA TGCGCACCGAAGTGCCGACCGGCACCATGGCCGCCATTTCCAGCACGTTGTTGTTGAACATGCGGAAGCAGCCGTGGCTGGTGCGCATACCGATGCCGAA
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| Amino Acid Sequence |
>lipoprotein
MNNVLKFSALALAAVLATGCSSASKETEARLTATEDAAARAQARADEAYRKADEALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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