Pseudomonas sp. URIL14HWK12:I6, H043_RS0120780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00016.16_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCAACAGCTGCACACTATCAGCCTCGGCGGGATCGCTTGCAATTATCACCGCGCGTGGCGCCACGGCACGGCGCTGCAAGTGCGCATGCCGACACTCAA CGCCGAGATCTGTTATCCGGGCTATGTCGCGTGGTGTCTGCGGCGCAAAAAGGGCTATCTGGTGGGGATCGCATTCACCGATGAGCAGACGCTGTTCAGT GCCCGGATGGGCGAACAGGTGTGCCAGATCGAACGTTATTGCCGCATGAACGAGGCCCACGACGATCTGCAGGATATTCAGGCGCTGGCCCTGCAATGGG TCGAACAACACGCCGACGAGTTCTCCCACGACAGCGTGCGCAAGGCTTTTGCCCAGCCAGTGCTGGATTAAAGCGGCGTTTGCCCATTGTCGAGCCGCGT CTGACGCGCTAAGGTTCGGCTCCCCGACGCGCTTAAATCTGCTGTGCTCCGCCGCGCGGGGATCGCTGGCGGCCGGCACCCGTGACCTGACGAGTAAACG
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| DNA Sequence for Gene |
>H043_RS0120780
ATGGCTGATTTACCGATCAACGACCTAAACGTCGCCTCTAACGAGACCCTGATCACTCCCGATCAGCTCAAGCGTGATATCCCTCTGAGCGATGCTGCGC TGCGCACCGTCACCAAGGGCCGCGAAGTCATTCGCAACATTCTTGATGGCACCGACCACCGTCTGTTCGTAGTGATCGGCCCGTGCTCGATCCACGATAT CAAGGCTGCCCACGAATACGCCGATCGCCTCAAGGTGCTGGCGGAGGAAGTCTCCGACACCCTGTATCTGGTCATGCGCGTGTATTTCGAGAAGCCACGA ACCACCGTTGGCTGGAAAGGCCTGATCAACGATCCGTACCTGGATGACTCGTTCAAGATTCAAGACGGTCTGCATATCGGTCGCCAGTTGCTGCTGGACC TGGCCGAGAAAGGCCTGCCGACCGCCACCGAAGCCCTCGACCCGATCTCCCCGCAGTATCTGCAGGACCTGATCAGCTGGTCGGCCATCGGCGCACGCAC TACCGAATCCCAGACCCACCGTGAAATGGCTTCCGGTCTGTCCTCGGCTGTCGGCTTCAAGAACGGTACCGACGGCGGCCTGACCGTGGCGATCAACGCC CTGCAGTCGGTGTCCAGCCCGCACCGTTTCCTGGGGATCAACCAGGAAGGTGGCGTGTCGATCGTCACCACCAAGGGCAACGCCTACGGTCACGTGGTGC TGCGTGGCGGCAACGGCAAGCCGAACTACGATTCGGTCAGCGTCGCCCTGTGCGAGCAGGCGCTGAACAAGGCGAAGATCAAACCGAACATCATGGTTGA TTGCAGCCACGCCAACTCCAACAAGGACCCGGCTCTGCAACCGCTGGTGATGGAGAACGTCGCCAACCAGATCCTCGAAGGCAACCAGTCGATCATCGGC CTGATGGTCGAGAGTCATCTGAACTGGGGCTGCCAGGCCATCCCGAAAGACCTCGCCGACCTGCAATACGGCGTGTCGATCACCGATGCCTGCATCGACT GGTCCGCCACCGAGAACACCCTGCGCGGCATGCACGCCAAGCTCAAGGATGTTCTGCCGAAACGTCAGCGCAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGCGTTTCACGGGCATAAAAAAACGCCGGGCATTGCCCGGCGTTTTCGTGTGTGCGATTCAGATCTTGGCGGCGCGGCGCTGATGACGTTCCATGTAG CGCTCGACGTAGGAGCACGACGGGATCACCGTGTAGCCCATTTCTTCGGCGTACTGCAGCGCGCTTTCGGTCAGCGCGGCGGCAATGCCACGGCCGCGCA AGGCGTTGGGCACGAAAGTGCGATAGATATCCAGGGTCTGTTTCCCCAGATCCATATAGGTCAGGTAGGCACGATGACCGTCCACATTGGTCTCGAACTG ATGACCAGCCTGGTCATGGTGGATGGACAACGCCTCGCTCATCACTACTCCTCGCGGGTCTCGAATTCTGACCCCTACCTTACCGATGTTTTTCCGGCGA AGGAACATCTACGCCACCCCGTGCCTGATGGACACCGAGAAAAACCACACCGGTCTCGCGCAATCGAGCACGTCATAAATAGTAGGCACCATTGGCGAAA
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| Amino Acid Sequence |
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPINDLNVASNETLITPDQLKRDIPLSDAALRTVTKGREVIRNILDGTDHRLFVVIGPCSIHDIKAAHEYADRLKVLAEEVSDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKIQDGLHIGRQLLLDLAEKGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSAVGFKNGTDGGLTVAINA LQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDSVSVALCEQALNKAKIKPNIMVDCSHANSNKDPALQPLVMENVANQILEGNQSIIG LMVESHLNWGCQAIPKDLADLQYGVSITDACIDWSATENTLRGMHAKLKDVLPKRQRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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