Pseudomonas sp. URIL14HWK12:I6, H043_RS0117410
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00011.11_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGAAACAATTGTGATCGACGAACCGGCGCGTCAGGCGTTGCTGGCCTTCAACTGGCCGGGCAACGTTCGGCAGTTGCGCAATGTCTTGCGCACATTG GCGGCATTGTGTGATGAAGGGCGAATCGGGCTGGAGGATTTGCCGGCGATGATTCGGCAGGGGCGGCCAACGCTGGAGCTGAAGTCGGTTGAGTCCGAGC ATCCGCTGGAAGACGCTGAACGTCTGGCGTTGCTCGATGTGCTGGAGCAAACGCGCTGGCATATGACCCAGACCGCGCAGCAGCTCGGGGTCAGCCGTAA TACGCTCTACAGAAAGCTGCGTAAACACGCGATCACCCGTTAAACCGCGCCGCACCGTTCGCGAGCAGGCTCGCTCCCACAGGGTTAGCGCCTATCTTGT GGGAGCGAGCCTGCTCGCGAAGGCGTCGGCAAAGGCGAAACACAAGGTGCGATTTCCCCCTCCCTGCGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>H043_RS0117410
ATGCACATTCATATTCTGGGTATCTGCGGGACTTTCATGGGCTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCACGTGACCGGCTCCGACGCCAACG TCTATCCGCCGATGAGCACGCAGCTTGAGGCCCAGGGCATTCAGTTGACCCAGGGCTACGACCCGGCCCAGCTCGATCCGGCACCGGATCTGGTGGTGAT CGGCAACGCCATGTCCCGCGGCAACCCAGCGGTGGAATATGTGCTGAACAAAGGCCTGCCGTACGTATCCGGCCCGCAATGGCTGGCCGATCACGTGCTG CAAGGGCGCTGGGTGCTGGCGGTTGCCGGCACGCACGGCAAGACCACCACCAGCAGCATGCTCGCCTGGGTGCTGGAACATGCCGGGATGAGCCCGGGGT TCCTGATCGGCGGGGTGCCGCAGAATTTCTCGGTGTCCGCACGTCTGGGCGGCACGCCGTTCTTCGTGATCGAGGCCGACGAGTACGACAGCGCGTTTTT CGATAAGCGTTCGAAGTTCGTCCACTACCGTCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCCGACATCTTCCCCGATCTGCCGGCGATC GAGCGGCAGTTCCACCACTTGGTGCGGACTATTCCGAGCGAAGGTCTGGTGATCCACCCGACCACCGAACCGGCCTTGCAGCGCGTGATCGAAATGGGCT GCTGGACCCCGGTGCAGACCACCGGCGTCGGCGGTCAGTGGCAGGTCAAGTTGCTCAAAGACGATGGCTCGGCGTTCGAAGTAATGTTCGAAGGCGTGTC CCAGGGCACGGTCGAATGGGAGTTGACCGGTCAGCACAACGTCGCCAACGCCTTGGCTGCGCTGGCAGCGGCGCGGCATGTCGGTGTGGTGCCAGCGATG GGCATCGCCGGGTTGAGCGCATTCAAGAACGTCAAACGCCGGATGGAGAAAGTCGCCGAAGTACGCGGCATCACCATCTACGACGACTTCGCCCACCACC CGACCGCCATTGCCACCACCCTCGATGGCTTGCGCAAGCGCATCGGCGACGCACCGCTGATCGCGATCATCGAGCCGCGCTCCAACTCGATGAAGCTCGG CGCACACCGTGACGGTCTGCCGGACAGCGTAGTCGATGCCGATCAGGTGATCTGGTACGCCCCGGCCAACCTCGGTTGGGATCTGGGCGCCACTGCCGCA CTGTGCAGCGTGCCGTCGATTGTCAGCGATTCGCTAGAAGGCATCATCGAACGCGTGAAGAGCCAGGCCCAGCCCGGCACTCACGTGGTGATCATGAGCA ACGGTGGCTTTGGCGGTCTGCACGGCAAACTCGCCGAGGCACTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACTTTTGCCCAGAGCGGCGGCCCGGAACGCATCACGCTGGCGATGACCGGCGCGTCCGGCGCGCAGTATGGATTGCGCCTGCTCGACTGCCTGGTACG GGAAGATCGCGAAGTGCACTTCCTGATCTCCAAGGCTGCGCAACTGGTGATGGCCACCGAGACCGATGTCACGCTGCCGCCCAAGCCGCAGATGATGCAG GCGTTCCTCACCGAGTACACCGGGGCGGCCGCCGGGCAGATCCGCGTGTACGGCAAGGAAGACTGGATGTCGCCGGTAGCCTCGGGCTCCGGCGCACCAG CGGCGATGGTCGTGGTGCCGTGTTCCACCGGTACCTTGTCGGCGATTGCGACGGGCGCGTGCAACAACCTGATCGAGCGCGCGGCGGACGTCACCTTGAA GGAGCGGCGCCAGTTGATTCTGGTGCCACGCGAGGCACCGTATTCGAGCATTCATCTGGAACACATGCTCAAGTTGTCGAACATGGGCGTGACCATCCTG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIQLTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGVGGQWQVKLLKDDGSAFEVMFEGVSQGTVEWELTGQHNVANALAALAAARHVGVVPAM GIAGLSAFKNVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPDSVVDADQVIWYAPANLGWDLGATAA LCSVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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