Pseudomonas sp. URIL14HWK12:I6, H043_RS0117335
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00011.11_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACCAGCTGTAAGGGATTGCTGTGCGACTGCGACTGATCGCCGTCGGTTCACGCATGCCCAAGTGGGTGGAAGAAGGCTGGCATGAATATGCCAGGCGT CTTCCGTCCGAGCTGGCGCTGGAACTGGTGGAAATTCCGCTCAATACCCGTGGCAAGAACGCCGACGTGGCCCGTTTCATCCGCCAGGAAGGCGAAGCCA TGCTGGCCAAGGTCGGGCCGAACGAGCGGATCGTCACGCTGGAAGTCCACGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTCGAACTCGACCGTTGGCG GCTGGATTCGCGCACGGTCAATTTCATGGTCGGTGGCCCCGAAGGGCTGGCGCCGGAAGTCTGTGCCCGCGCCGATCAGCGCTGGTCGTTGTCGCCGCTG ACCTTGCCACACCCGCTGGTGCGGATCCTGATCGGCGAACAGCTGTACCGTGCCTGGACCGTGCTGTCCGGTCACCCTTACCACAAGTAGTCCTGCCCTC
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| DNA Sequence for Gene |
>H043_RS0117335
ATGTCTCAGCCGATCCGCATCAAGGACCACGAAAAGGACGCCCGCCTGGTGCGCAGCCGCGTCGTGTTCGGGGCCATTGCGGTCATGCTGTTGATCTGCG TGCTGATTGCGCGGCTGTACTACTTGCAGGTGATCCAGTACGAGTACCACTCGACACTCTCGGAAAACAACCGCGTCCACGTGCAGCCGATTCCACCGAC CCGCGGCTTGATCTTCGACCGCAACGGCGTGGTGGTGGCGGACAACCGTCCGAGCTTCAGCCTGAGCATGACCCGCGAGCGTTCCGGCGACTGGCAGCAA GTGCTCGACGTGATCGTCGAAGTGCTGCAACTGACGCCCGAGGACCGGGTGATCTTCGAGAAACGCATGCGTCAGGGGCGTCGGCCATTCGAGCCGGTGC CGATCCTGTTTGAGTTGACCGAAGAGCAGATCGCCCGGATCGCGGTTAACCAGTTCCGCCTGCCTGGGGTGGAAGTGGTCGCGCAACTGGTGCGCCACTA CCCGCAGGGCGCGCATTTTGCGCACTCGGTGGGTTACATGGGGCGCATCAACGAGAAAGAGCTGAAGACCCTCGACCCGGTCAACTACAGCGGCACCCAC CACATCGGCAAGACCGGCATCGAGCGTTTCTACGAGCCGGAGCTGCACGGGCAGGTGGGGTACGAGGAAGTCGAAACCAACGCTCGGGGCCGCGTATTGC GCGTGCTCAAGCGTACCGATCCGATTCCCGGCAAGGACATCGTCCTGAGCCTGGACATCAAACTGCAGGAAGCGGCCGAAGCTGCGCTGGGCGGGCGACG TGGCGCGGTGGTGGCGCTCGATCCGAAGACTGGCGAAGTGCTGGCGATGGTCAGCCAGCCGAGTTTCGACCCGAACCTGTTCGTCACCGGCATCAGCTTC AAGGCCTATGCCGAACTGCGCGATTCCATCGACCGGCCGCTGTTCAACCGCGTGCTGCGCGGCCTGTACCCGCCGGGTTCGACGATCAAGCCGGCGGTGG CGATTGCCGGTCTCGATTCTGGCGTAGTGACAGCGTCGAGCCGGGTGTTCGACCCCGGTTACTACATGCTGCCCAACTACGATCACAAGTACCGCAACTG GAACCGCACCGGTGACGGCTTCGTCGATCTCGACACGGCGATCATGCGTTCCAACGACACCTACTTCTATGACCTGGCGCACAAGCTGGGCATCGATCGG TTGTCGGCCTACATGAACAAGTTCGGCATCGGCCAGAAGGTCTCGCTGGACATGTTCGAAGAATCCCCCGGCCTGATGCCGTCCCGCGAGTGGAAGCGTG CGACGCGCAAGCAGGCGTGGTTCCCGGGTGAAACCCTGATTCTGGGGATTGGCCAGGGTTATATGCAGTCCACACCGTTGCAACTGGCGCAGGCCACGGC GCTGGTCGCCAACAAAGGCATCTGGAACCGGCCGCACCTGGCCAAGACCATTGAGGGCGCCAAACCGGTAGACGAGAACCCGATGCCGGACATCGTCCTG CGCGATCCGTCGGACTGGACCAAGGTCAACCACGGCATGCAGCAGGTGATGCACGGCGCCCGGGGTACTGCGCGCAAGGCAGCAATCGGTGCGCAATACC GCATCGCCGGCAAGTCCGGTACCGCTCAGGTCGTCGCGATCAAACAAGGTGAAAAATACGACCGCTCCAAGGTTCAGGAACGCCACCGCGACCACGCCTT GTTCGTCGGTTTCGCCCCGGCCGACAACCCGAAAATAGTGGTTTCGGTGATGGTCGAGAACGGTGAGTCCGGCTCCGGGGTCGCCGCGCCAGTGGTGCGT CAGGTGATGGACGCCTGGCTTCTGGATCAGGATGGTCGATTGAAGGCCGAATACGCCGGTCCTATCAGTGCGGAGGCTACGGCCCGTGATGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTTGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGCCGGGCGACGCTGCTGCAACGTCTGCATATCGATGGCCCGCTGTTGATCCTGCTGCTGATC CTCGCCGCAGGCAGTCTGTTCGTGCTGTATTCGGCCAGTGGCAAGAGCTGGGATCTGCTGGGCAAACAAGCCACGTCGTTCGGCATCGGCCTGGTGTCGA TGATTGTCATCGCCCAGTTCGAACCACGGTTCATGGCGCGTTGGGTGCCGCTCGGTTACGTGGTCGGCGTGGTGCTGCTGATGGTGGTGGACATCATGGG CCACAACGCCATGGGCGCAACTCGCTGGATCAACATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAGTTCATGAAGATTCTGATGCCGGCGACGATTGCC TGGTATCTGTCCAAACGCACGCTGCCACCGCAACTCAAGCACGTCGGCATCAGCCTGATGCTGATCGGTGTGCCGTTCATTCTGATCGTGCGCCAGCCCG
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRIKDHEKDARLVRSRVVFGAIAVMLLICVLIARLYYLQVIQYEYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQQ VLDVIVEVLQLTPEDRVIFEKRMRQGRRPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYMGRINEKELKTLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPKTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASSRVFDPGYYMLPNYDHKYRNWNRTGDGFVDLDTAIMRSNDTYFYDLAHKLGIDR LSAYMNKFGIGQKVSLDMFEESPGLMPSREWKRATRKQAWFPGETLILGIGQGYMQSTPLQLAQATALVANKGIWNRPHLAKTIEGAKPVDENPMPDIVL RDPSDWTKVNHGMQQVMHGARGTARKAAIGAQYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVSVMVENGESGSGVAAPVVR QVMDAWLLDQDGRLKAEYAGPISAEATARDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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