Pseudomonas sp. URIL14HWK12:I6, H043_RS0114250
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTGAAAAGGGCATCGTCGAGCGGCCGGATACGGCGAAAATGGCCCAGTTGATGTGCCGCAAGCGCCTGCATTGATTGGCTTTGGCGTCTGCAAGGGCCC CATCGCTGGCAAGCCAGCTCCCACAGGTTCTGTGCTCGCCGCTGACCCTGTGGGAGCTGGCTTGCCAGCGAAGGGGCCCTAAAAGTCAATAAACATCGCA AAACCTGACCTCAAAACTGCATTCAAAGAAGCTCTGAGCCTCTCTCGTCCCCTTTACGCCTGTCATCGGTCAACTAACTATGCTCCATGCGCATCTGGGG GATAGGTGCGTGGCGGCTCTTGTGATAACATCCGGCGTTTTCCGAGGCAGCTTCACGGAGCTGTCTTTACTGCGCAAATCCACGGTTCGATTTGTTGATT TGTCGTAAGTCGGCGCATGGCACTCAGCCTGCCCCGACGAGCTTCGTACATCCCATATGGATATGACGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>H043_RS0114250
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAACAGTCCTACCTCGACTACGCGATGAGCGTAATCGTCGGCCGTGCAC TGCCGGATGCGCGCGATGGCCTCAAGCCCGTGCACCGTCGCGTACTGTTCGCGATGAGCGAGCTGGGCAACGACTTCAACAAGCCGTACAAGAAATCTGC CCGTGTTGTCGGTGACGTGATCGGTAAGTATCACCCGCACGGTGATACCGCGGTGTACGACACCATCGTCCGCATGGCTCAGCCTTTCTCCCTGCGCTAC CTGTTGGTTGACGGTCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCCGCGGCCATGCGATACACCGAAGTGCGCATGACCAAGCTGGCGCACGAGC TGCTGGCTGACCTGCATAAAGAAACCGTGGACTGGGTGCCGAACTACGACGGCACCGAAATGATCCCGGCGGTGATGCCGACGCGCATCCCCAACCTGCT GGTCAACGGTTCCAGCGGTATCGCCGTGGGCATGGCAACCAACATTCCGCCGCACAACCTCGGTGAAGTCATCGACGGTTGCCTGGCCCTCATCGACAAC CCCGAGCTGACCGTCGATGAGCTGATGCAATACATCCCCGGTCCGGACTTCCCGACGGCCGCGATCATCAACGGTCGTGCCGGCATCATCGAAGCCTACC GTACCGGTCGCGGCCGCATTTACATGCGTGCCCGTTCGATCATCGAAGACATCGACAAGGTCGGCGGCCGTCAGCAGATCGTCATCACCGAACTCCCGTA TCAGCTGAACAAGGCGCGTCTGATCGAGAAGATCGCCGAGCTGGTCAAAGAGAAGAAGCTTGAAGGCATCACCGAGCTGCGCGACGAGTCCGACAAGGAC GGTATGCGCGTCGTGATCGAGCTGCGTCGCGGCGAAGTGCCTGAGGTGATCCTCAACAACCTCTACGCCCAGACCCAGCTGCAATCGGTATTCGGCATCA ACATCGTCGCGCTGATCGACGGCCGCCCGCGGATTCTGAACCTCAAGGATCTGCTGGAAGCCTTCGTCCGTCACCGTCGCGAAGTGGTTACCCGCCGTAC CGTGTTCGAACTGCGCAAGGCCCGCGAGCGTGGTCACATCCTCGAGGGTCAGGCCGTTGCCCTGTCGAACATCGACCCGGTGATCGCCCTGATCAAGGCG TCGCCGACCCCGTCGGAAGCCAAGGAAGCGCTGGTCAGCACCCCTTGGGAGTCCAGCGCCGTAGTCGCGATGGTTGAACGTGCCGGCGCCGATTCGTGCC GTCCGGAGAACCTCGATCCGCAATACGGTCTGCGTGAAGGCAAGTACTTCCTGTCGCCAGAGCAGGCGCAAGCCATTCTCGAACTGCGTCTGCACCGTCT GACCGGTCTGGAGCACGAGAAGCTGCTGGCCGAGTATCAAGAGATCCTCAACCAGATCGGCGAGCTGATCCGCATCCTCAACAGCGCCGTGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGTGATCCGCGCCGAATACGGCGACGTGCGTCGCACCGAGATTCTCGATGCGCGTCTCGACCTGACCCTGGGCGATA TGATCCCGGAAGAAGAGCGCGTCGTGACCATCTCCCACGGTGGCTACGCCAAGACCCAGCCACTGGCTGCGTACCAGGCACAGCGTCGTGGCGGCAAAGG CAAATCGGCGACCGGCGTCAAGGATGAGGATTACATCGCTCACCTGCTGGTGGCCAACAGTCACACCACCCTCCTGCTGTTCTCCAGCAAGGGCAAGGTG TACTGGCTGAAGACTTACGAAATTCCGGAAGCATCCCGCGCCGCCCGTGGTCGTCCGCTGGTCAACCTGCTGCCGCTGGATGACGGTGAATACATCACCA CCATGCTGCCGGTCGAGGAATACACCGAAGGTCACTACATCTTCATGGCGACCGCCAACGGCACCGTCAAGAAGACCCCGCTGGAATCCTTCAGCCGTCA GCGCAGCGTCGGTCTGATCGCGCTGGAGCTGGACGAAGGCGACGTGCTGATCTCTGCGGCCATCACCGATGGCGAGCGCGAAGTGATGCTGTTCTCCGAC GGCGGCAAAGTCACGCGCTTCAAAGAGTCTGACGTGCGTGCCATGGGCCGTACCGCCCGCGGTGTACGCGGCATGCGTCTGCCGGAAGGGCAGAAGCTGA TTTCGATGCTGATCCCGGAAGAAGGTAGCCAGATCCTCACCGCTTCCGAGCGTGGTTATGGCAAGCGTACCGCGATCACCGAGTTCCCTGAGTACAAGCG TGGCGGCCAAGGCGTGATCGCCATGGTCAGCAACGAGCGTAACGGCCGTCTGGTCGGTGCGGTTCAGGTGCTCGACGGCGAAGAAATCATGCTGATCTCC GATCAGGGCACGTTGGTACGTACCCGTGTCGACGAAGTGTCGAGCCTGGGCCGTAACACCCAGGGCGTGACCCTGATCAAACTGGCCAAGGATGAAACCC TGGTTGGTCTGGAGCGGGTTCAGGAGCCGTCGGAAGTCGAAGGCGATGAGCTTGAAGGTGAAGAGGGTGCCGGGTTCGAGGGGGATGTCGTGATCGACGA CGTTGCCGAGGACCAGCAACTCGACGCCGCAGCTGACGAAGAGCCGCAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGACAAGCGAGGGGGCGGATGAAAATTCGCCCCCTTGTTATTTGTCCGGTATGAAATTTCGACATCATGGAGATCCCCTGTGGGAGCGAGCCTGCTCG CGAATGCAGGCGCTGCGGTACCTCTGACCCACCGCGGTGATGCATTCGCGAGCAGGCTCGCTCCCACAGGGCTGTGTTGATCGGTAGTGTGATTTATTGC GTGATACCACCAAATCAGAGCGAGATTGGATGTGAGCAAGCGAGCCTATAACTTCTGTGCCGGTCCTGCGGCGCTTCCTGAAGCTGTCCTGCAACGTGCC CAGGGTGAACTCCTTGATTGGCATGGCAAGGGTCTGTCGGTCATGGAAATGAGCCATCGCAGCGATGAGTTCGTGTCCATTGCCACCCAGGCCGAGCAGG ACCTGCGTGACCTGCTGAATATCCCGTCGAACTATAAAGTGCTGTTTCTGCAAGGCGGCGCCAGCCAGCAGTTTGCGCAGATTCCGCTGAACCTGTTGCC
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALVSTPWESSAVVAMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSAVRLM EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV YWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSD GGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLIS DQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQEPSEVEGDELEGEEGAGFEGDVVIDDVAEDQQLDAAADEEPQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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