Pseudomonas sp. URIL14HWK12:I6, H043_RS0114220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGCATGCGTGCACAGGCCTATCCGGGAGAAAACCCGCTGAACAATCCGACCCCGGAAGAGATCATGCCGGTTTACCTGTACCTGATGGGTCCTGACA GCGCAGGCATCAACGGCCAGGCATTCAACGCGCAATAACTGCCATACGTCGCTTTTGTTGCCGTGGCGGATTACCGTCGCGGCACGCAATTGCCGCTTCC CACCGTCACACTTCAGTCAAATATCCGCCACCCGCCCTCAAAGCAAAAAGCCATCCTGTTGATTCCTAAAGGTTTTAATAAACCTGAACCGAATGGCACG ACTTTCGCTCTAATTTTCCTCAAAGCATGCCGTGTGAAGGCACTGGGGCAAGGCCGATTTCGATAGCTGACTAATCGTCATCAGGCAGACTAAACTTACG CCAAATGTCCTACGGGACTGATGGATCAGTATGACGCGCAGCCCATAGCCGCTCTCACCCAGCCTGTAAGACAGACTTACTGCTTAGGGGCTCACGCCAT
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| DNA Sequence for Gene |
>H043_RS0114220
ATGAAATCACCCTCCCAGACCAATGCAATTGACTTTGACAGTGCCAAATTGCAACGCCTGGGCTTTGGTCAGCTGCCTCCGCTTCTGGAACGCCCGGCCA GCTTGGCGCAATTGCGTCAGCAAATGAGCCTGCAACTGCAAACCAGTCTTGAGCCGCAACGAATCCTCGGTCTGTTTTTCCGCGAAGTTCAGCGCCTTGT GCCGCTGGATGCCTTGAGCTACGTGCATTCGGGCAGCGACCTGCGCCTGGAGTTCGGTGCCCGCGGTCACCATTCGGTCAGCTACAGCCTCAGCCACGAA GGCGAGCACCTGGGTGAACTGGTCTTCCGCCGCAACCAGCGCTTCAGCGAGCAGGATCAGGGCAACCTCGAATCGCTGCTGTCGTCGCTGCTGTTTCCGA TGCGCAACGCCCTGCTCTACCGCGCGGCAACACAAAGTGCGCTGCGCGACCCGTTGACCGGAACCGGCAACCGGATCGCCATGGAGCAGACCCTGCAACG CGAGATCGACATGTCCCGTCGGCACCTGCAACCGTTGTCGGTGCTGATGCTCGACATCGACCACTTCAAACGGGTCAACGACAGCCACGGCCACAGCGCC GGGGATGACGTACTCAAAGCGGTGGCAGCGTCGATCAAGGGCCAACTGCGTAACGTCGACATGGTGTTTCGCTATGGCGGGGAAGAATTTCTGATCTTGC TGTGCAACACCGGCCGGGAAGCGGCGGCGATGGTCGGCGAGCGTCTGCGCCACGCCGCGCAGACTGCAGAATATTTCGCGGACGGCAAACTGATCGACCT GACCGTGAGCCTTGGCTGCTCGACTCTGTTGCCGGGAGAGTCAGCTGACAGCCTGCTGCGCCGGGCCGACAGTGCGCTGTATGTGGCCAAGCGCGAGGGG CGCAATCGGTTGGCGATGGCGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTCTTCCAGATACCCAAAAACCACTGTGGGAGCGGGCTTGCTCGCGAAAGCGGTGTGCCAGTCAAACAATTGCTGACTGACACACCGCTTTCGCGAGCA AGCCCGCTCCCACATTTGCTTTGGCGTTTTGCCGAAAATCAGCTCTCTACGAGTGCCCGGCGTTCACGCCCGTGCAACGCCCGCTCGGCAGTCTCCAGTT GCATGCAGCGCTCCAGAAACAGGTACATGTAGTCGTAGCTCTTGCACACCGCCTGACGCAGTTCGGTCTGCAGAGCCTTGCTCGGGTTCATGCCCGCCAG CGTACAGATGATTTCCAGCGCTTCCCATGGGTGAGCGTCGTCGTACTGGGCATGCATCTTCAGCCACTTCATTGCACGCTTGCGCTCTTCTTCCGGGAAC GCTGCCGCGTACACGCCAGTGGAGCAGACCAGCGCCGACCACTCCCCGGTCGCGCCCTCGATGGCGTAGTTGGTCGCAGCGATGGCGACGATCAGCGAAT
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| Amino Acid Sequence |
>DeoR faimly transcriptional regulator
MKSPSQTNAIDFDSAKLQRLGFGQLPPLLERPASLAQLRQQMSLQLQTSLEPQRILGLFFREVQRLVPLDALSYVHSGSDLRLEFGARGHHSVSYSLSHE GEHLGELVFRRNQRFSEQDQGNLESLLSSLLFPMRNALLYRAATQSALRDPLTGTGNRIAMEQTLQREIDMSRRHLQPLSVLMLDIDHFKRVNDSHGHSA GDDVLKAVAASIKGQLRNVDMVFRYGGEEFLILLCNTGREAAAMVGERLRHAAQTAEYFADGKLIDLTVSLGCSTLLPGESADSLLRRADSALYVAKREG RNRLAMAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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