Pseudomonas sp. URIL14HWK12:I6, H043_RS0111255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGAACGCAGCACGTTCATCCCGATCCTGGCCAACAGCTTCGCCCGTCACACCACCGAAATCGTCGTGGCCCACGCCGAGCGTGAACACGGCGACTCGA AATACAGCCCGATGCGCCTGATCAACCTGATGTTCGATCTGGTCACCTGCATGACCACCACCCCGCTGCGTCTGTTGAGCATCGTCGGCTTCGCCATGGC CGGCTTGGGCGTGCTGTTCGCGATTGCGTTGATTGTCTTGCGTCTGGCCTTCGGTGCCGGTTGGGCCGGTGACGGCATGTTCGTGCTGTTCGCCGTGCTG TTCGTGTTCACCGGTGGCCAATTCATCGGCATGGGCCTGCTGGGTGAATACCTCGGCCGCATGTACAGCGATGTGCGCGCCCGTCCACGTTTCTTCATCG AAAAGGTGTTGCGCAGCCAGCCGGCCGATCCGGCCCCTGCCGTCACCGTTGATGGTCTTTCTTCTACCGCTACTTCTTCCACTTCCGATCAGGTTCTCTC
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| DNA Sequence for Gene |
>H043_RS0111255
ATGAGTGCAAAAACTGTTGTCTTCGCTTACCACGATATTGGCTGCGCCGGCATTGAAGCCCTGCTCAACAGCGGCTATGACATTGCAGCAGTGTTCACTC ACGCCGATGATCCGAAAGAAAACGCGTTCTATGCCTCGGTTGCACAGCTGTGCGCCAACAAAGGCATCCCGGTCCACGCGCCGGAAGACGCCAACCACCC ACTGTGGATCGAGCGCATCGCCAAGCTGGACCCGGAGTACATCTTCTCCTTCTACTACCGCAACCTGCTGAGCGAACCGCTGCTGGCCCTGGCCAAAAAA GGCGCGTTCAATCTGCACGGTTCGTTGCTGCCACGCTATCGCGGCCGCGCTCCGGCGAACTGGGTGCTGGTCAACGGCGAAACCGAAACCGGCGTCACCC TGCACCGTATGGTCAAGCGCGCTGATGCTGGCGCCATCGTTGCCCAGCAGCGCGTTGCCATCGACCGCAGCGACACCGGCCTGACCCTGCACGCCAAACT GCGCACTGCCGCCAGCGACCTGCTGCGCGACACCCTGCCGAACATGCTGCAAGGCCAGATCACTGAAACCCCGCAAGACGAATCGAAAGCCACCGTGTTC GGTCGCCGCACCCCGGCGGACGGCAAACTGGTCTGGGCCAAACCGGCTGAAGAACTGTTCAATCTGGTGCGCGCCGTCACCCGTCCTTACCCGGGCGCGT TCTGCGCCGTGGGCGAGCACAAACTGATTGTCTGGAGCGCCGAGGTCGTCAAGGGCAACGAAGGCCAGGCGCCAGGTCGCGTGATCAGCGTCGATCCGCT GCGCATTGCCTGCGGTCAGGACTCGCTGGTGATCAACGCCGGTCAGCGCAACGACAACGGCCTGTACCTCAGCGGCCCGCAACTGGCCAACGAACTGGGT CTGGTCGATGGCTCGCTGCTGCGCGGCGCCGAATCCGGTCGTGCGCCACGTCGCACTCGTGTGCTGATCCTCGGTGTCAACGGCTTCATCGGTAACCACC TGTCCGAGCGCCTGCTGCGTGACGACCGCTACGAAGTCTACGGTCTGGACATCGGCTCCGACGCCATTGACCGTCTGCGCAGCCACCCGCACTTCCACTT CGTCGAAGGCGACATCAGCATTCACTCCGAGTGGATCGAGTACCACATCAAGAAGTGCGACGTGGTCCTGCCGCTGGTGGCCATCGCCACGCCGATCGAA TACACCCGCAATCCGCTGCGCGTATTCGAACTGGACTTCGAAGAGAACCTGAAACTGGTGCGCTACTGCGTCAAGTACAACAAGCGCGTGATCTTCCCGT CGACCTCGGAAGTCTATGGCATGTGCCAGGACAAGAACTTCGACGAAGACAGCTCGAACCTGATCGTCGGTCCGATCAACAAGCAGCGCTGGATCTACTC GGTCTCCAAGCAACTGCTGGATCGCGTGATCTGGGCTTACGGCGCCAAGGGCCTGAACTTCACCCTGTTCCGTCCGTTCAACTGGATGGGCCCGCGTCTG GACCGTCTGGATTCAGCGCGTATCGGCAGCTCCCGCGCCATCACCCAGTTGATCCTCAACCTGGTGGAAGGTACGCCGATCCGTCTGTTCGACGGTGGCG AGCAGAAGCGTTGCTTCACTGACATCGCTGACGGCGTTGAAGCCCTGGCGCGGATCATCGACAACGACAACGATGTCTGCAACGGCCAGATCATCAACAT CGGCAACCCGGACAACGAAGCCAGCATCCGTCAGTTGGGCGAAGAGCTGCTGCGTCAGTTCGAAGCGCACCCGCTGCGCCACAACTTCCCGCCGTTCGCC GGTTTCCGCGACGTGGAAAGCAAGGCGTTCTACGGTGCCGGTTACCAGGACGTGGAACACCGCAAGCCAAGCATCGCCAATGCCAAGCGCCTGCTGAACT GGGAGCCGACCGTGGAAATGCGCGAGACCATCGGCAACACCCTGGACTTCTTCCTGCGTGAAGCCATGCTCGAAATCGCGGACAAGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCAGGCAGGTCTTCGTATCGATGTCGACACCTACCGTGGCACCCGTGAAGGTGTGCCGCGGCTGCTGGAGATGCTCGACGAGGCGCAGGTCAAGGCAAC GTTTTTCTTCAGTGTCGGCCCGGACAACATGGGTCGGCATCTGTGGCGCCTGATCCGCCCGCAGTTCCTCTGGAAAATGCTGCGCTCCAACGCTGCCGGC CTCTACGGCTGGGACATTTTGCTGGCCGGCACTGCCTGGCCCGGCAAACCGATTGGCCGTGATCTCGGGCACCTGATGCGTCAGGCCCGGGACGCCGGTC ACGAAGTCGGCCTGCACGCCTGGGATCACCATGGCTGGCAGGCCAACGCCGGGCGTTGGAGCGATGCCCAACTGATCGAACAGATTCGTCAGGGCGTCGA CACGTTGAGCGACATCCTCGGAGAAAAGATCCAGTGTTCGGCCGCCGCCGGTTGGCGTGCGGACGAGCGCGTGATCGAGGCCAAACAGGCCTTCGGCTTT
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| Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSAKTVVFAYHDIGCAGIEALLNSGYDIAAVFTHADDPKENAFYASVAQLCANKGIPVHAPEDANHPLWIERIAKLDPEYIFSFYYRNLLSEPLLALAKK GAFNLHGSLLPRYRGRAPANWVLVNGETETGVTLHRMVKRADAGAIVAQQRVAIDRSDTGLTLHAKLRTAASDLLRDTLPNMLQGQITETPQDESKATVF GRRTPADGKLVWAKPAEELFNLVRAVTRPYPGAFCAVGEHKLIVWSAEVVKGNEGQAPGRVISVDPLRIACGQDSLVINAGQRNDNGLYLSGPQLANELG LVDGSLLRGAESGRAPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIDRLRSHPHFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIE YTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKNFDEDSSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTLFRPFNWMGPRL DRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEALARIIDNDNDVCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRHNFPPFA GFRDVESKAFYGAGYQDVEHRKPSIANAKRLLNWEPTVEMRETIGNTLDFFLREAMLEIADKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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