Pseudomonas sp. URIL14HWK12:I6, H043_RS0109630 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACGGCGTGAAGCGCAGGTGCTGGCGGTGGACATCAACCCCGCAGCGCTGCGCTTGACCGCGATCAACGCGGCATTGGCCGAAGTCGCGAATGTCGAGG TGCAGGCCAGTGATGTGCTGCAGGGCACCGAAGGCAATTTCGACCTGATTGTCGCCAACCCGCCGTACATGGCCGATCCGGCCGGGCGTGCTTATCGGCA TGGCGGTGGCTCGCTCGGCGCCGGCCTGTCGCTACGCATCGTCGAGCAGGCGCTCAATCGGCTGGCCCCCGGTGGCTCCTTGTTGCTGTACACCGGCGTG GCGATGGTCGATGGCCGCGATCCGTTTTTCGACACTGTGGTGCCGCGCCTGGATTCGACGCGATTCGGCTGGACCTATCGCGAACTGGATCCTGACGTGT TCGGTGAAGAGTTGTTGAACCCCGGTTACCAGCGCGTGGACCGGATCGCCGTGGTCGCGCTGACCGTGACCCGCATTGGCTGATACAAGGCAGGTGCGCC
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| DNA Sequence for Gene |
>H043_RS0109630
|ligD
ATGACTAGGAACCTTGACGACTACAATCGCATGCGCGACTTTTCCGCGACCTCGGAGCCCGCTGCCGTCAAGCGTCGTGGCCGCAGCAAGGCCACTGAGC ATGCGCTGCAGTTCTGCATCCAGAAGCACGACGCTTCGCACCTGCATTATGACTTTCGCCTCGAACTCGATGGCGCGCTGAAGAGCTGGGCGGTGCCCAA GGGGCCGTCACTCGATCCCAAGGTCAAGCGTCTGGCGGTACACGTCGAAGACCATCCGCTGGATTACGCGACGTTCGAGGGCAGCATTCCCGAAGGGCAT TACGGCGCCGGAGATGTAATTGTCTGGGATCGCGGTGTATGGATTCCGCAGGAGGATCCGGCCAAGGCCTATGCCAAGGGTAAACTCAAGTTCGAGCTGC AAGGCGAAAAGCTCTCCGGGATCTGGAACCTGGTGCGCACGCACATGCCGGGCAAGAAGGAAAACTGGTTTCTGATCAAACATCAGGACAGTGCGGCGCG CCCGCAGGACGATTACGATGTGCTCAGCGCCGAGCCGGACAGCGTGCTCAGCGAACGCACCCTGATCAGCAAACCCAAGCTCGCCGCCGAACAAGTCAAA CCCGTGAAAAAGACCCCGGCGAAACCGCGCAAAGCGGCATCCGGGACACTCACTGGTGCGCGCAAGGCCAAACTGCCGGCGCAACTCAAGCCGGAATTGG CGACCCTGGTCGACAGCGCACCCGAAGGGCAGTGGAGCTACGAGATCAAGTTCGACGGCTACCGGATCCTGGCGCGCATCGATCACGACCAGGTGCAACT CTTCACCCGCAACGGTCACGACTGGACGCACAAACTGCCGCAACAGGCGCAAGCCCTCGCTGAGCTGGGGCTGGAATCGGCATGGCTGGACGGCGAAGTG GTGGTCACCAACGAGCAGGGTGTGCCGGACTTTCAGGCGCTGCAAAACGCCTTCGAAGCCGGGCGCAGCGGCAGCATCATGTACTACCTGTTCGACATGC CCTACCTCAACGGCGTTGACCTGCGCGAAGTGCCGGTCGAGGAGCGCCGCGCGGCGTTGTCCACGGTACTCGGCGGGTATGAGCAGCCGTTGCTGCGCTT CTCCGAGGTCTTCGATGAAACGGCAGACGCACTTCTCAACAGCGCCTGTCAGATGCAGATGGAGGGGCTGATCGGCAAACGCCTCGGCTCGCCTTACGTT TCGCGGCGCAGCAGTGACTGGATCAAGCTCAAGTGCAAGCATCGGCAGGAATTCGTGGTCGTCGGCTATACCGATCCGAAAGGTGCGCGCAGTGCCTTCG GCGCGTTATTGCTGGGCCTGCATGATCGCGACAGCGGCGAGTTGCGCTACGCCGGCAAGGTCGGCACTGGGTTCAACGAGACCACACTGAAAAGCATCCT GGCCCAGCTCAAGCCGTTGCAGGTCAAGAAGGCTGCGGTGGTTAATCCGCCGAGCGGCTTCGAGGCCAAAGGCGTGCACTGGCTCAAACCGAATCTGTTG GCAGAAGTGGCGTTCGCCGAAATGACCAAGGATGGCTCGGTACGCCACGCCGTGTTCCATGGTCTGCGCAATGACAAACCGGCCAAGTCGATTACCGAGG AGCGCGCGAAACCCGTGAAGACTTCAGCGAAACCCACCCCGTCGAAAAAAGCTGCCTCGTCGAAGAAAGCTGCAGAATCAAAGAAAGCTACGGAGCCGAA GAAAGCCGAAGCGGCGCCGTCCCAGCTGGGCCTCGCCAGCGGCAAAGTGCGCATCACCCACCCCGACCGGGTGATCGATGCGGTCAGCGGCACCACCAAG ATGCAATTGGCCGAGTATTACGCCAGCGTCGCCGAGTGGATTCTGCCGCAGCTCAAGGATCGCCCGGTTGCGCTGGTGCGGGCGCCGGACGGCATTGCCG GCGAACTGTTCTTTCAGAAAAACGCCGAGCGCCTGGCGATCCCCGGCATTACCACCCTGGACAAGGACGTCACCGGGCAACCGGTGATGCTGATCAACAA CGCCGAAGCCTTGATCGGCGCAGTGCAGATGAGCACGGTCGAGTTGCACACTTGGAACGCCACCACCGTCGATCTGGAAAAGCCTGACCGGTTTGTTCTC GACCTCGATCCAGACCCTGCGCTGCCGTGGAAAAGCATGGTCGAAGCCACGGCGCTCACCCTGACCGTACTGGATGAACTGGGGCTCAAGGTGTTTCTCA AGACCAGCGGCGGCAAGGGCATTCACCTGGTGGTGCCTTTGACCCGCAAGCATGGCTGGGACGAGGTCAAGGATTTCAGCCATGCGATCGTCAGTCACAT GGCGAATTTGTTGCCGGAACGCTTTTCCGCAGTGTCCGGGCCGAAAAATCGTGTCGGGCGGATCTTCATCGACTACCTGCGCAACGGTCTGGGCGCCACC ACCATTTGTGCCTACGCCGCGCGAACCCGCGAGGGACTGCCGGTGTCGGTACCGCTGTTTCGCGAAGAAGTGGGGGAGATCAAGGGTGGCTATCAGTGGA ACATCAGCAATGTCCATGAGCGTCTGAACGAAGTCGGCGATGAGCCGTGGGCCGACCTGAAGAAAACCCGCCAGAGCATCACTGCCGAGATGCGCAAACG GGTTGGCATGAAAAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTCGCGCAGCAAGTCGTGAGCGTTGAGCAGTTCGAAGGCGATTTCGGGGTGGTTGTTCAAGCCCCGACGAATCGCCGCCGGAATTGACTTGCGG GTCTTGCGGCACAGTCCCGGCAGCGCCTCGATCTGAATCTCGATGCCGAGCATGCTGCGCACTTCATGAAAGCCCGGGGAGATTTCCACCCGCAGGCCCA ACTGTTCGTGCATGCGCTGTTGCAGATGCCGCAAGTCCGCAAGGTCTTTAAGTTGTTCCAGCCGGGCGAGGAGGATTTTTTCCTGCTCGCGGGTCAGGCG CAGAATGCGCAGATCCGTGCCCGGCGCTTCCAGCAACGCGTCGCGCCCGCAATCGCAGGCGCCGGGCGGGCAGGGTGAGCGCAAAGGCGCAGGAGGCGCA AGAGTCGTCATGGCCTCCATCATAGAGGCCGTCAGACGGTTTTGCCTATGCGCCCTCAGCTGCCGTCCATCGGCCGCTGCGTCCCTGGCAACTACTGATT
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MTRNLDDYNRMRDFSATSEPAAVKRRGRSKATEHALQFCIQKHDASHLHYDFRLELDGALKSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGH YGAGDVIVWDRGVWIPQEDPAKAYAKGKLKFELQGEKLSGIWNLVRTHMPGKKENWFLIKHQDSAARPQDDYDVLSAEPDSVLSERTLISKPKLAAEQVK PVKKTPAKPRKAASGTLTGARKAKLPAQLKPELATLVDSAPEGQWSYEIKFDGYRILARIDHDQVQLFTRNGHDWTHKLPQQAQALAELGLESAWLDGEV VVTNEQGVPDFQALQNAFEAGRSGSIMYYLFDMPYLNGVDLREVPVEERRAALSTVLGGYEQPLLRFSEVFDETADALLNSACQMQMEGLIGKRLGSPYV SRRSSDWIKLKCKHRQEFVVVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQVKKAAVVNPPSGFEAKGVHWLKPNLL AEVAFAEMTKDGSVRHAVFHGLRNDKPAKSITEERAKPVKTSAKPTPSKKAASSKKAAESKKATEPKKAEAAPSQLGLASGKVRITHPDRVIDAVSGTTK MQLAEYYASVAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDVTGQPVMLINNAEALIGAVQMSTVELHTWNATTVDLEKPDRFVL DLDPDPALPWKSMVEATALTLTVLDELGLKVFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMANLLPERFSAVSGPKNRVGRIFIDYLRNGLGAT TICAYAARTREGLPVSVPLFREEVGEIKGGYQWNISNVHERLNEVGDEPWADLKKTRQSITAEMRKRVGMKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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