Strain | Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CATTGAAGGAACACCTGGGTTACAGGCTGCAGAATGTGTTTCTGGATGTCGCGCACATGGCGCCATTGTTGTGCCCACAGGCGAACATTCGCGAGGCCGG CCTGGATGAATGGATCGACTGGTTCAAGCTTGAGGTGTTCGAGCGGCACAACGCGAGTGCCGATGCGCTGGCCACGGCGGAACTGGCGTTGATCCTGTTC AGCCGGGCGCGGCAGCAGCAGATTCATAGTCCGTTGAACCTGCAACAGCGCTTGAGTCAGTGGAAACGCCGTCAGCAGGCGCCTTCCTTCTAGATCTTCG GTGCCGGTACTGGCCTCTTCGCGAGCAAGCCCGCTCCCACACTGGCATGCATTCCCCCTGTGGGAGCGGGCTTGCTCGCGAAGAACGATGATCCGGTCTT ACTGATACCACCCGACCAGTGGCCAATTGCTAACCATTCCCACCTCTGCGAGAATCGCGAACAATTCTCGTTGGTTAACACTTCCCAATCGGTGCGTCTG
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DNA Sequence for Gene |
>H043_RS0103185
GTGTCGTCAGTCCCAAGCCCTCACAGTGAACTCGTCGGTGCGTTGTATCGCGACCATCGCGGTTGGCTGCTGAGCTGGTTGCGGCGCAACGTGGCGTGCC CGCAGCGGGCCGAAGACCTGAGCCAGGACACCTTCGTACGGCTGCTCGGTCGCGATGAATTGCTGACGCCGCGCGAACCGCGGGCGTTTCTGGTGGCGAT CGCCAAGGGCCTGCTGTTCGACTACTTCCGCCGCGCCGCGCTGGAACAGGCATACCTCACTGAATTGATGCTGATCCCCGAAGGCGAACAACCTTCGGTG GAAGAACAGCAACTGATCCTCGAAGACCTCAAGGCCATCGACCGCCTGCTCGGCAAACTGTCGACCAAGGCCAGCGCCGCTTTCCTGTATAACCGCCTCG ACGGCCTCGGCCACGCCGAAATCGCCGAGAAGCTTGGCGTCTCGGTGCCGCGTGTGCGGCAGTACCTCGCGCAAGGCATTCGCCAGTGCTACATCGCCCT GTACGGTGAGCCGACATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACCCGGCCAGTTCCAAACCGGTCTCGGCTCAGGTGCTGGACGCGGCGATTGCCTGGCAGTTGTCGCTGGATTCCGGCAGTCCGCTGGAGCGCGAAGAGTT CGCCAAGTGGCACGCGGCCCATGAAGAACACGCCCGCGCCTGGCGCCAGCTGGGCATGCTCGATCAGCGCTTCAGCGTCGCCAACGGCCCGGCCCGCGCG GCCTTGCTGCAATCGCGCGAAGGCATTCGACGCCGTGTGCGCAAGCTCGGCAGCGGATTGGCCAGCGTGGTGGCGCTCGTCGGTCTGGCGTTGTTTGCCG GTGATCGCTACTTGCCGCTGGATTACTGGCTCGCCGATCAACGCACCGCCACCGGCGAGCAGCGTACGGTGCGCCTGGCCGATGGCACCGTGCTCAACCT CAACACCCACAGCGCGGTGGATGTGCGTTTCGATGCCAGGCAGCGGCTGATCGTGTTGCAGGCAGGCGAGATCATGGTCGAGACCGGCCATGGCGATGCG
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Amino Acid Sequence |
>RNA polymerase sigma factor
MSSVPSPHSELVGALYRDHRGWLLSWLRRNVACPQRAEDLSQDTFVRLLGRDELLTPREPRAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEGEQPSV EEQQLILEDLKAIDRLLGKLSTKASAAFLYNRLDGLGHAEIAEKLGVSVPRVRQYLAQGIRQCYIALYGEPT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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