Pseudomonas sp. URIL14HWK12:I6, H043_RS0100950

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 533 693 1.4E-29
Coils Coil Coil - - 219 260 -
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 311 407 1.9E-6
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 537 704 6.6E-47
CDD cd01948 EAL IPR001633 EAL domain 712 952 1.55001E-112
Pfam PF08447 PAS fold IPR013655 PAS fold-3 311 394 1.4E-18
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 293 400 1.73E-14
SMART SM00091 pas_2 IPR000014 PAS domain 409 475 5.5E-6
SMART SM00086 pac_2 IPR001610 PAC motif 358 401 9.6E-8
Gene3D G3DSA:3.30.450.20 PAS domain - - 405 536 1.8E-29
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 414 521 2.97E-23
CDD cd00130 PAS IPR000014 PAS domain 418 520 1.58981E-8
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 385 960 0.0
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 539 698 8.63E-41
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 711 959 1.2E-90
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 706 962 3.1E-103
CDD cd01949 GGDEF IPR000160 GGDEF domain 535 694 6.84453E-49
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 406 529 2.3E-16
Coils Coil Coil - - 700 720 -
CDD cd00130 PAS IPR000014 PAS domain 296 398 1.23979E-7
SMART SM00052 duf2_2 IPR001633 EAL domain 706 952 4.8E-122
Gene3D G3DSA:3.30.450.20 PAS domain - - 276 397 5.6E-33
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 534 691 2.5E-40
Pfam PF00563 EAL domain IPR001633 EAL domain 712 947 5.7E-74
SMART SM00086 pac_2 IPR001610 PAC motif 481 523 0.002
SMART SM00091 pas_2 IPR000014 PAS domain 284 351 68.0
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 707 962 8.5E-94
SMART SM00267 duf1_3 IPR000160 GGDEF domain 523 696 3.3E-49
Pfam PF13426 PAS domain IPR000014 PAS domain 420 521 7.9E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.