Pseudomonas sp. URMO17WK12:I4, H042_RS0118400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAGCGACGCTAAGCGCAGGCGAGATCTGCGTACGGCAGCAGGGCGACAGTTGCCAGTTTTCGGTGTTCAGTGGCGCCGGGCAGCTGCAGCCAAGTGTCT ACGACACCCTGGCGCTGCAGCCGGGGCAGCGGCTGACGCTGCGCGGCGGGCGCGTCGAGTCCACCGGGGCCTTCGATGTGCGGCAGCTCGGCTGGCGTGA CGGTGTGCTGATGGCCAACGACCAGCCGTTGGGTGATTTCCTGCGCGAACTCGAACGCTATCGCCCCGGCGTGCTGCGCTGGTCGCCATCCTTGGAAAGG TTGCGGGTGACCGGCAGTTTCCGCCTGGCCGACACCGATCAGATCCTCGATCTGCTGGCCGCCAGCCTGCCGTTGCAGGTGCAGAAGCGCACCCGTTACT GGGTCACTTTGCTGCCCCGCGAAAAAATTGCCTGAAGGCTGTCCCTTTTTTTTCGCTCGCCTGTCATGGGAAGTAGTGAATTAAAAAGAGAGCGTCTGCC
|
|
| DNA Sequence for Gene |
>H042_RS0118400
ATGCCATCACTGACACGTCATCGGCCCCGTCTGGTGTCTTCGATTTCCTACTCCACCGTCTGCCTGAGCCTAATGCTCGGTCTGGGCAGCATCGCGCCGC TGAGTGCCGAGGCGCAGACCGCCGAGCGCAGCTACAGCGTGCCGAGCAGCAGCCTGGGTGAAGCCCTGAGCCGCTTCGCCAGCCAGGCCGGGGTGAGCCT GTCGGTGGATCCGGCGCTGGTCTCCGGGCGCAGCAGCCCGGGTCTGAATGGCACCTACAGTGTCGATGAGGGTTTCACCCGTCTGCTGCAGGGCAGCGGC TTGCGCCTGCAGCCGGTAGGCGATTCGGCCTATACCATCGCGCCTGAGGCCGATAGCGCCGATACCCTGGAAATCGCGCCCACGGCCATCACCGGTGTGA CCATCCCGTCGGAAAGCCTGGAAGGCGAGCGCTACGCCGGCGGCCAGGTTGCCCGTCGCAGCTCCCAGGGGCTGCTCGGCTCGCGGGATTTCATGGAATC GCCGCTGAGCATGACCACCTACACCAGCGAGGCGGTGAAGAATACCCAGTCGCGTACCCTGGCCGACCTGACCGCCAGCGACCCGGCGGTACGCTCCACC AACCCGGCGGGCGGGCGCTTCGAGCAGTTCACCATTCGCGGCTTCAGTCTGTTCAACAGCGATGTCTCCTATGGTGGGCTGTACGGCATCCTGCCGACGT ACTCCATCGACATAGAAATGGCCGACCGCGTCGACATCCTTCGCGGCCCGACCCAGTTGGTGAACGGCATTTCGCCGCGCGGCAGCGTCGGCGGCGGCAT CAATATCGTGCCCAAGCGCGCCACCGACAAACCGATCACCGAATTCACCGGCAGCTACGCCTCGGACAGCCAGGTTGGCGGCGCGGTGGACGTAGGTCGT CGCTTCGGCGAGGACAACCGCTTCGGCATCCGCTTCAACGGAGTCAAGCAGTCCGGCGATACCGAATGGGATCACCAGAAGGTCAACCGCGAGATGGCCG TGGTCGGCCTCGACTTCCGCGACGAGCGTCTGCGTCTGTCGATGGATGTCGGCCATACCGAGCGCGATACCGATACGCCGCAAGAGCGGGTGCTGGTCGG TGCCAACGCGCCTGTGCCAAAAGCCGATGATGTACGCCATAACTACGCACAGGCATGGAGCAAGGCCAGAACGAAGGACACCTTCGGCGCTCTGCGCGGC GAATACGATATTGATGACTCCTTGATGGTCTACGGCGCTGTAGGTGCGCGTAAGAGTCGCCATGATTTCCTGCGCCATAACGTGTCTGTGCTCAACGCGG CTGGTGATTTCAACGTAGACCCTCGAGGTTTTACGCGCGATGAGGACGTGCATACCGTCAATGCAGGGATACGCAAGTGGTTCAACACCGGCTCGGTTAG CCATGAAGTGAATCTTGCTGCTGACTATTTCGCCATGGATTTTGAAAATGGCGATACGCGCTATGCGCGCGGTAGAAGCAATCTTTACAACCCACGGCCA ACACCTGAGCCGGGCGCGCCTACAGCACCCAAATCCAAGGATTACACCGAGAATCGTTTCAGCGGTGTCGCGCTCTCGGACACCATCGGCTTTATGGAGG ACCGCCTGCTGGTGACAGTGGGAGGACGCTGGCAACGAGTTGTGGTGGATGACTGGTCGGATGGGGTGAAACAGCCCACCGCTTATGATGAAGAGAAGTT TTCGCCTTCGGCTGGCATCTTGTTCAAGGCGACCGAACAACTCTCGCTGTACGCCAACTACATGGAAGGCCTGAGCCAAGGCAAGATCGCTCCCGGCACA GCCGAGAACGAAAATGAAATTTTCCCACCTTTCATCAGTCGCCAGGCTGAGGCGGGTGCCAAGTACGACATGGGCAAGTTTGCTTTGACGGCAGCAGTAT TCCGCATCAAACAGCCGGCTTACGAGACCGCAGCGCCGGTAGGGACGCAAACGGAAGGTACGTTCGGCCCTAACGGCAAACGCATCAACGATGGTGTGGA GCTCAACGTATTCGGCGAGCCAATCGATGGTGTCAGGCTGCTCGGTGGCGTGATGTACATCGACAGCGAGTTGAAAGACACCAACAACGGTGGTGCCAAC GATGGTAACCGCGCACCGGCCACGCCCAAGCTCAATGCCAATTTCGGTGCCGAATGGGATCTGCCAGGTATTCACGGCCTGACGTTGACAGGTCGCGGCA TCTACAGCAGTTCGCAATATCTGGATCAGGCCAACAACCAGGAAATTGGCTCCTGGACGCGCTATGACCTCGGCGCGCGCTATGCCTTCAAAGTCAACGA GACTGACGTGACTCTTCGCGGCACCGTCGAAAACGTCGCCAATTCCCGTGACTGGATTTCCGCTGGCGCTTCGGACGACAGCGCTGCTGGTTTGACCCTT TCCACACCGCGCACCTTCGTGCTGTCGGCCACCCTCGGTTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCAACCCATAGGATCGCGTTTGCAACCTGGTAAGGGCTCGTTGTCCAGGCGCACGTTGATGCGCCTTTCCCTGGGCGTTATCGCTGCCGGTGCAATACC CCTGGCGAAAGCCGGGCTTGCACCGCAGCGCGTCATCACCTTGTTTCAAGGCGCCACCGACACTGCAGTGGCGCTTGGCATTCGGCCGGCCGGCGTGGTC GATTCGTGGAGCGAGAAGCCCATGTATCGCTACCTGCGCCCGGCGCTGGAAGGCGTGCCCCATGTCGGCCTGGAAACCCAGCCGAGCCTGGAGGACATCG CCTTGCTCACTCCGGACCTGATCGTCGCCTCGCGCTTTCGCCACGAGCGGGTCAAGGGGTTGCTCGAACAGCTGTGCCCGGTGGTGATGCTCGACGAGGT ATTCGAATTCCGCCACACCCTGCGCGTGATGGGCGCCGCCACGGCGCGCGACGTCGAAGCGCAGGCTTTGCAAGCACGCTGGGATGCACGCATCAGCGCC
|
|
| Amino Acid Sequence |
>TonB-dependent receptor
MPSLTRHRPRLVSSISYSTVCLSLMLGLGSIAPLSAEAQTAERSYSVPSSSLGEALSRFASQAGVSLSVDPALVSGRSSPGLNGTYSVDEGFTRLLQGSG LRLQPVGDSAYTIAPEADSADTLEIAPTAITGVTIPSESLEGERYAGGQVARRSSQGLLGSRDFMESPLSMTTYTSEAVKNTQSRTLADLTASDPAVRST NPAGGRFEQFTIRGFSLFNSDVSYGGLYGILPTYSIDIEMADRVDILRGPTQLVNGISPRGSVGGGINIVPKRATDKPITEFTGSYASDSQVGGAVDVGR RFGEDNRFGIRFNGVKQSGDTEWDHQKVNREMAVVGLDFRDERLRLSMDVGHTERDTDTPQERVLVGANAPVPKADDVRHNYAQAWSKARTKDTFGALRG EYDIDDSLMVYGAVGARKSRHDFLRHNVSVLNAAGDFNVDPRGFTRDEDVHTVNAGIRKWFNTGSVSHEVNLAADYFAMDFENGDTRYARGRSNLYNPRP TPEPGAPTAPKSKDYTENRFSGVALSDTIGFMEDRLLVTVGGRWQRVVVDDWSDGVKQPTAYDEEKFSPSAGILFKATEQLSLYANYMEGLSQGKIAPGT AENENEIFPPFISRQAEAGAKYDMGKFALTAAVFRIKQPAYETAAPVGTQTEGTFGPNGKRINDGVELNVFGEPIDGVRLLGGVMYIDSELKDTNNGGAN DGNRAPATPKLNANFGAEWDLPGIHGLTLTGRGIYSSSQYLDQANNQEIGSWTRYDLGARYAFKVNETDVTLRGTVENVANSRDWISAGASDDSAAGLTL STPRTFVLSATLGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|